Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 693 a.a., Topoisomerase IA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  293 bits (750), Expect = 2e-83
 Identities = 203/612 (33%), Positives = 310/612 (50%), Gaps = 44/612 (7%)

Query: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60
           M+  + EKPS A++IA++LGA+ + +G   GNG  VTW  GHL+    P+ Y      + 
Sbjct: 1   MKTVIAEKPSVAREIASLLGATEKKEGHLTGNGYFVTWAFGHLVGLGMPEDYG--ITGFD 58

Query: 61  LADLPIVPEKWKMRVKPK-----------TASQFKAVKRLLGEAQELVIATDADREGEMI 109
            A LPI+P  + + V+                Q K +++L   +  +++ATDA REGE+I
Sbjct: 59  KAALPILPHPFLLAVRKVKKDKGYTTDAGAIKQLKIIEQLFNRSDGIIVATDAGREGELI 118

Query: 110 ARELVEHCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMN 169
            R + E+ +   P QRLW+S+L + +I++    LK G E   LY +A GRSRADWL+G+N
Sbjct: 119 FRYIYEYLKCIKPFQRLWISSLTEKAIKQGFDNLKDGKEFDGLYQAAQGRSRADWLVGIN 178

Query: 170 MSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITF 229
            ++  ++    +   GV  +GRVQTPTL L+  R     +F    YW I +    E I F
Sbjct: 179 ATQALSI----AAGNGVYSLGRVQTPTLALICRRYLENKNFSVQKYWQIQLSHTKEFIEF 234

Query: 230 TAQWRAAEDACDDQGRCLDPQLARDAADAM-RNAATARLVKLRTERMREVAPLPFDLGTL 288
            +    +++  D+Q      +LA+D   ++ RN  TA +  + T+ + E  PL FDL  L
Sbjct: 235 KS---LSKNKWDNQ------KLAKDTLKSIERNGNTAAVTSVETKNVTEQPPLLFDLTGL 285

Query: 289 QEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAA 348
           Q+  +KKL L A+ETL IAQSLYE  K ITYPR+   Y+P    +E P ++ AL   D  
Sbjct: 286 QKEVNKKLNLSAEETLKIAQSLYE-KKFITYPRTGSKYIPEDMWTEIPNLIRALQDRDTC 344

Query: 349 VNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQFL 408
              +      +   R  ND +V+ HHG++ T        L  K  AVY +I  R L    
Sbjct: 345 KQAVAKVKWGRFNKRIVNDLRVTDHHGLLTTDTIPSA--LNAKENAVYDMIAFRLLEAIS 402

Query: 409 PNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGR----EAPAPQALPAL 464
                + T              G  V+EPGW+          KG     +A   + LP +
Sbjct: 403 GACTKEATHITLQALHYDFTTKGCKVLEPGWR--------SIKGNFTDDDAEPIEDLPDI 454

Query: 465 VQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEAT 524
            +G    + +  + +  T+PP  +TE  L+ AM+   K +++   ++ L++  GIGT AT
Sbjct: 455 KEGDVLKIKQAAVLEKKTKPPVLYTEAGLLSAMETAGKDIKNEEERKALQN-IGIGTPAT 513

Query: 525 RAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAV-PRAIADPGTTAIWEQALDMVQSGEM 583
           RA II+ L  R Y+ +  K+L  T     + + V  R IAD   TA WE AL  +++ EM
Sbjct: 514 RAAIIETLFTRNYIQREKKSLIPTEKGLQVYELVKDRKIADVAMTAEWELALQKIETSEM 573

Query: 584 SLEEFVAKQAAW 595
           +   F  +  A+
Sbjct: 574 NAIAFQKEMEAY 585