Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 773 a.a., DNA topoisomerase I, bacterial from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  101 bits (252), Expect = 1e-25
 Identities = 121/549 (22%), Positives = 218/549 (39%), Gaps = 77/549 (14%)

Query: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWVLA 62
           L + E P++AK I             +LG    VT   GH+ +    D   +    +   
Sbjct: 5   LVIVESPAKAKTIEG-----------YLGKDYKVTSSYGHVRDLPKGDKAIDIKNHF--- 50

Query: 63  DLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRY-RG 121
                  K    V        K +K+++ ++  + +A+D DREGE I+  L E  +    
Sbjct: 51  -------KPTYEVTSDKKEVIKQLKKMVKDSDTIYLASDDDREGEAISWHLKEVLKLDND 103

Query: 122 PIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQS 181
             +R+    +   +I KA+    P +    L ++   R   D L+G  +S +        
Sbjct: 104 KTKRIVFREITKNAITKAIE--NPRSIDIDLVNAQQARRILDRLVGFELSPVLW-----K 156

Query: 182 GYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAI----DVDLQHERITFTAQWRAAE 237
             +  L  GRVQ+  +R +V+R+R I  F   + + +    +V  +        ++   E
Sbjct: 157 KVKAGLSAGRVQSVAVRFIVEREREIDKFESKSSYKVTAIFNVKGKELNAELPKKFETQE 216

Query: 238 DACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSKKLG 297
           +A      CL+   +              +  L  +  ++    PF   TLQ+  S+KL 
Sbjct: 217 EAEAFLKNCLEADFS--------------IKNLEKKPAKKTPAAPFTTSTLQQEASRKLS 262

Query: 298 LGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELMPHIE 357
               +T+ +AQ LYE  K ITY R+D   + LSQ        A  +  +  ++   P   
Sbjct: 263 FSVAQTMTLAQRLYEAGK-ITYMRTDS--VNLSQE-------AMESAQNQIISAFGPEYH 312

Query: 358 TQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQFLPNHEYDRTQ 417
             R+  + ++    AH  I PT    +        + +Y LI  R +A  + +   ++T 
Sbjct: 313 KSRKYTSKSEGAQEAHEAIRPTNFANEEISGERNEQRLYELIWKRAIASQMADALLEKTL 372

Query: 418 ADFDCAGQ--ALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQA-LPALVQGQDYAVAK 474
                +     L A G+V+   G+ +   E+    +  E    +  LP L  GQD  + +
Sbjct: 373 VTIGISNSDLTLSASGEVIKFEGFLKVYLESTDDEEEEENNDNKGLLPPLTIGQDLDLIE 432

Query: 475 VNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLD 534
           +  +  +T+PP  +TE  L+K ++ +                 GIG  +T A  I  +  
Sbjct: 433 MKSRQSFTRPPARYTEASLVKKLEEM-----------------GIGRPSTYAPTISTIQK 475

Query: 535 RGYLVKNGK 543
           R Y++K  +
Sbjct: 476 RNYVIKESR 484