Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

 Score =  126 bits (316), Expect = 5e-33
 Identities = 144/537 (26%), Positives = 231/537 (43%), Gaps = 65/537 (12%)

Query: 68  PEK-WK-----MRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYRG 121
           PEK WK     ++ K K  ++   +K+L  +A  + +ATD DREGE IA  L E    + 
Sbjct: 82  PEKDWKAHYQVLQGKEKVVNE---LKKLAKDADTIYLATDLDREGEAIAWHLQELLGKKD 138

Query: 122 PI-QRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ 180
              QR+  + +   +I+ A +   PG    S  ++   R   D ++G  +S L      +
Sbjct: 139 KTYQRVVFNEITKNAIQDAFS--DPGELNISRVNAQQARRFLDRVVGFMVSPLLWKKIAR 196

Query: 181 SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTAQWRAAED-- 238
                 L  GRVQ+  +RLVV+R+R I  FVP  +W +  DL       T+Q +AA    
Sbjct: 197 G-----LSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHADL-------TSQQKAALRML 244

Query: 239 ACDDQGRCLDPQLARDAADAMRNAATARL-VKLRTERMREVAP-LPFDLGTLQEICSKKL 296
               QG    P+   +   A+ +   A   V+ R  +  +  P  PF   TLQ+  S +L
Sbjct: 245 VAKHQGNAFKPKNKAETDKALADLEGANYKVESRESKPTQSRPSAPFITSTLQQAASTRL 304

Query: 297 GLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELMPHI 356
           G G ++T+ +AQ LYE    ITY R+D   L       A   +     +D   ++ +P  
Sbjct: 305 GFGVKKTMMMAQRLYEA-GYITYMRTDSTNLSQEALDSARAYI-----SDNFGDKYLPDS 358

Query: 357 ETQRRSRAWNDAKVSAHHGIIPTG---AGKDVGQLTGKHRAVYTLIRARYLAQFLPNHEY 413
             +  S+   +    AH  I P+    +   +G +    + +Y LI  +++A  +   +Y
Sbjct: 359 PNRYGSK---EGAQEAHEAIRPSNVSISAASLGDMERDAQRLYELIWRQFVACQMTPAKY 415

Query: 414 DRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQGQDYAVA 473
           D T          L A G+V+   GW R  P+     KG E      LP + +G    + 
Sbjct: 416 DATTIKVAAGDYELTAKGRVLKFDGWTRVQPQ--LRKKGEE---ELMLPDVQKGDVLDLK 470

Query: 474 KVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLL 533
            ++ K  +T+P   F E  L+K +                 +  GIG  +T A II  + 
Sbjct: 471 ALDPKQHFTKPVARFNEASLVKEL-----------------EKRGIGRPSTYASIISTIQ 513

Query: 534 DRGYLVKNGKALSATPAAFSLIDAVPRAIADPGT---TAIWEQALDMVQSGEMSLEE 587
           DRGY+    K   A      + D +     D  +   TA  EQ LD +  G+ + ++
Sbjct: 514 DRGYVRLENKRFYAEKMGEIVNDRLMENFDDLMSYDFTANMEQHLDDIAEGKKNWKD 570