Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score =  136 bits (343), Expect = 4e-36
 Identities = 155/611 (25%), Positives = 256/611 (41%), Gaps = 76/611 (12%)

Query: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60
           M + + E P++AK I             +LG+G  V    GH+ +    D          
Sbjct: 1   MNVVVVESPAKAKTINK-----------YLGSGYKVLASFGHVRDLPAKDG--------- 40

Query: 61  LADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIA---RELVEHC 117
            + LP    +    V   +A + K +   +  +  L +ATD DREGE I+    +L++  
Sbjct: 41  -SVLPDQDFEMSWEVDSASAKRMKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKK 99

Query: 118 RYRG--PIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFT 175
           R  G  P++R+  +A+   ++  A+A   P      L  + L R   D+L+G N+S    
Sbjct: 100 RVLGDKPVKRVVFNAITKKAVLDAMA--NPRDIDVPLVDAYLARRALDYLVGFNLS---P 154

Query: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTAQWRA 235
           +L R+    G    GRVQ+  LRLV DR+  I  FV   YW I   L+  R         
Sbjct: 155 VLWRK--LPGARSAGRVQSVALRLVCDRESEIERFVSEEYWNISALLKTPRGDEFEAKLV 212

Query: 236 AEDACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSKK 295
           + D    Q R +      +   A+   AT  +  +  + ++     PF   TLQ+  S +
Sbjct: 213 SADGKRLQSRGIKTGEDANRLKALLEGATYVVDTVEAKPVKRNPGPPFTTSTLQQAASSR 272

Query: 296 LGLGAQETLDIAQSLY-------ETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAA 348
           +G GA  T+ +AQ LY       ET  +ITY R+D G     +  +A ++       +  
Sbjct: 273 MGFGASRTMQVAQKLYEGIDIGGETVGLITYMRTD-GVQIAPEAIDAARLAIGEQFGERY 331

Query: 349 VNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQ----LTGKHRAVYTLIRARYL 404
           V E      T+ ++         AH  I PT   +   Q    L      +Y LI  R +
Sbjct: 332 VPEKARFYSTKAKNAQ------EAHEAIRPTDFTRTPDQVKRYLDADQLRLYDLIWKRGI 385

Query: 405 AQFLPNHEYDRTQ----ADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQA 460
           A  + + E +RT     AD +     LRAVG V+   G+  A  +     +  +    + 
Sbjct: 386 ASQMASAEIERTTVEILADKNGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDDEG 445

Query: 461 -LPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGI 519
            LP +   ++ A  K+N    +T+PP  ++E  LIK M+ +                 GI
Sbjct: 446 RLPQINARENLAKQKINASQHFTEPPPRYSEASLIKKMEEL-----------------GI 488

Query: 520 GTEATRAGIIQGLLDRGYLVKNGKAL---SATPAAFSLIDAVPRAIADPGTTAIWEQALD 576
           G  +T A  ++ L DR Y+V + + L   S      + +++      +   TA  E+ LD
Sbjct: 489 GRPSTYAATLKTLSDREYIVIDKRKLIPHSRGRLVTAFLESFFTKYVEYDFTAALEEKLD 548

Query: 577 MVQSGEMSLEE 587
            + +GE+  ++
Sbjct: 549 RISAGELDWKQ 559