Pairwise Alignments

Query, 356 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  180 bits (457), Expect = 5e-50
 Identities = 116/346 (33%), Positives = 182/346 (52%), Gaps = 3/346 (0%)

Query: 7   ILAASLLLVACSKEDAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRVPGRI 66
           +L  ++ LV CS + A  +PVR V  + V A + +    F+  ++AR ES LGFRV G+I
Sbjct: 17  LLLPAVFLVGCSPKPAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVESRLGFRVAGKI 76

Query: 67  ARRVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQELFNRG 126
            RR  ++G  V+ G +LA LDP D +    +A+   A        A A+ +R +EL  + 
Sbjct: 77  TRRQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAADLKRYRELREQN 136

Query: 127 VGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAGQVVS 186
             + A+L+  +T  K  QA L+QA+A ++   +Q  Y  L  D AGI+TA  AE GQVV 
Sbjct: 137 FISGAELERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIITAIEAEPGQVVQ 196

Query: 187 AGQQVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIEPQAQSA 246
           AG  VV +A+   ++ V  +P   A  +       V G    +      VRE+   A + 
Sbjct: 197 AGTPVVRIAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGN-ELQGQVREVAASADAV 255

Query: 247 TRTRRARLTL--TETPPAFRLGTAISVTLSTAIAPRIEVPLSALQEVDGKTRIWLLDTHS 304
           TRT   ++ +     PP      A    L+ A A  +++P SAL++    + +W+LD  +
Sbjct: 256 TRTYSIKVAIDAATAPPLGATVYARPQALAHAGATVLKLPTSALRQEGKGSAVWVLDKST 315

Query: 305 QTVQTRDISVISRDADSALLNDGVKPGERIVIAGVNSLKPGQKVKI 350
            TV+++ + V + D + A++  G+ PG  +V AGV+ L PGQKV I
Sbjct: 316 MTVRSQAVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKVTI 361