Pairwise Alignments

Query, 356 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

 Score =  477 bits (1228), Expect = e-139
 Identities = 239/354 (67%), Positives = 299/354 (84%)

Query: 1   MKRLTGILAASLLLVACSKEDAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGF 60
           MKRL  +L+A++LLV C+ E+  PE +RPVLS++V+ + Q  LGRFAG+IQAR+ES LGF
Sbjct: 1   MKRLLLMLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGF 60

Query: 61  RVPGRIARRVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQ 120
           RV GRIARR +DVGA+V+ G  LA LDPTDQQNQLR+A+GDLA+VQAQ+INAQA+ARRQQ
Sbjct: 61  RVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQ 120

Query: 121 ELFNRGVGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAE 180
           +L++RGVGAQAQLDIAQT+LKTT A L+QA+++V+QA DQL Y+ LR DHA ++TAW AE
Sbjct: 121 QLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAE 180

Query: 181 AGQVVSAGQQVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIE 240
           AGQ V+AGQ VVTLARPD+KEAVIDLP GLAE+L   + F VA QLDP++NTTA +RE+E
Sbjct: 181 AGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELE 240

Query: 241 PQAQSATRTRRARLTLTETPPAFRLGTAISVTLSTAIAPRIEVPLSALQEVDGKTRIWLL 300
           PQA + TRTRRARLTL  TP AF LGTAISVTLS+ ++PR E+PLSAL E DGKT++W++
Sbjct: 241 PQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVI 300

Query: 301 DTHSQTVQTRDISVISRDADSALLNDGVKPGERIVIAGVNSLKPGQKVKIDEDS 354
           DT ++TV TRD+++I R ADS +L+ GV+PGER+V AGVNSLKPGQKV  DED+
Sbjct: 301 DTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKVTFDEDA 354