Pairwise Alignments

Query, 356 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 361 a.a., efflux protein from Agrobacterium fabrum C58

 Score =  266 bits (679), Expect = 8e-76
 Identities = 142/350 (40%), Positives = 228/350 (65%), Gaps = 4/350 (1%)

Query: 7   ILAASLLLVACS-KEDAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRVPGR 65
           +L  ++ L +C  K++A  E  RPVLS+ V+ +  + L R  GT+++R +++LGFRV GR
Sbjct: 10  LLIPAIALSSCQEKQEAAAEAPRPVLSVVVEEKLADAL-RLTGTVESRIKTDLGFRVLGR 68

Query: 66  IARRVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQELFNR 125
           I  R VDV   V+KG ++A +DP   +  ++SAQ DL+  +AQ  NA    +RQ+ L   
Sbjct: 69  IIARNVDVADLVKKGDVVASIDPLALELSVKSAQSDLSNAEAQLANAVTTEQRQRVLAEA 128

Query: 126 GVGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAGQVV 185
             G +A L+ A+  ++T  A + +A+A++++A +QL YA+LR +  G+VTA + E GQVV
Sbjct: 129 RSGTEAALEEAEQAMRTANAAVAKARANLDKAEEQLGYAQLRAEFDGVVTATSGEIGQVV 188

Query: 186 SAGQQVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIEPQAQS 245
           SAGQ VVT+ARP++++ V+D+P   A+RL     F +A QLDP ++ T +VREI P+A++
Sbjct: 189 SAGQTVVTIARPEVRDVVVDVPQFAAQRLEIGSTFEIALQLDPKIHMTGVVREIAPEAET 248

Query: 246 ATRTRRARLTLTETPPAFRLGTAISVTLSTAIAPRIEVPLSALQEVDGKTRIWLLDTHSQ 305
           ATRTRR +++L + P AFRLG+ ++     A  P+I +P SAL + D    +W+++  + 
Sbjct: 249 ATRTRRTKISLQDAPQAFRLGSVVTALALAASEPQITLPASALLKTDSGWGVWIVNADTA 308

Query: 306 TVQTRDISVISRDAD--SALLNDGVKPGERIVIAGVNSLKPGQKVKIDED 353
           TV  R +++    A+  S  +  G+KPGER+  AGV+ LK GQ ++ID++
Sbjct: 309 TVTYRPVTIDGEPAEGGSVRITGGIKPGERVASAGVHKLKDGQAIRIDQE 358