Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  178 bits (451), Expect = 3e-49
 Identities = 120/342 (35%), Positives = 181/342 (52%), Gaps = 6/342 (1%)

Query: 18  LSGCGEEKAEPKQHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSFRVGGKIIQRMVDV 77
           L GC  + A       V   TV +++F A    + +++ARV++ L FRV GKI +R  ++
Sbjct: 24  LVGCSPKPAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVESRLGFRVAGKITRRQAEL 83

Query: 78  GDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEKLLPKGYTSRSEY 137
           G  V A QVLA+LDP+D +   ++A+AQ  A        AA   R  +L  + + S +E 
Sbjct: 84  GQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAADLKRYRELREQNFISGAEL 143

Query: 138 DSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAEVGQVVQATVPIFS 197
           +  +   +++Q+ L  AQAQL++   Q  YT+L+AD  G+ITA +AE GQVVQA  P+  
Sbjct: 144 ERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIITAIEAEPGQVVQAGTPVVR 203

Query: 198 LARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTPAVAANTGTVQVK 257
           +A+DG RD VF V E         +P+TV      + +  G+VREV  +  A T T  +K
Sbjct: 204 IAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGN-ELQGQVREVAASADAVTRTYSIK 262

Query: 258 IALQALPKGMELGSVVSATANGPAKAS---IELPWAALTKDLSEPAVWLID-GDGKAQLH 313
           +A+ A      LG+ V A     A A    ++LP +AL ++    AVW++D      +  
Sbjct: 263 VAIDA-ATAPPLGATVYARPQALAHAGATVLKLPTSALRQEGKGSAVWVLDKSTMTVRSQ 321

Query: 314 KVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRVEIAQ 355
            V VA     + +I  G+  G  VV AG  +L PG +V I Q
Sbjct: 322 AVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKVTIYQ 363