Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 390 a.a., CzcABC family efflux RND transporter, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  115 bits (289), Expect = 2e-30
 Identities = 99/344 (28%), Positives = 160/344 (46%), Gaps = 15/344 (4%)

Query: 18  LSGCGEEKAEPK---QHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSF-RVGGKIIQR 73
           LS  G++ A P    Q   V V T      A  V+ TG + ARV   +     GG + + 
Sbjct: 46  LSMRGKDAAAPDAAPQAPVVSVLTPGQTMVARTVSSTGSLAARVDMPVGVVGEGGMVTRV 105

Query: 74  MVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEKLLPKGYTS 133
           +V  GD V A QVLA ++       V+S  AQV  ++A  K   A   R + L+ +G+ S
Sbjct: 106 LVQPGDWVRAGQVLATVERSVQSEQVNSLAAQVEVQRANAKLAQAQLERAKALVGRGFIS 165

Query: 134 RSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAEVGQVVQA-T 192
            ++ D   A    + + +  A+AQLA  R + G   + A A G++  R  E GQ+VQA  
Sbjct: 166 AADIDQRTATRDQAVAQVRVAEAQLAEQRARTGRLDIRAPASGLVLTRTVEPGQIVQAGG 225

Query: 193 VPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTPAVAANT- 251
             +F +A+DGE +    V E+ L         TV+ + + +    G+V +V+P V   T 
Sbjct: 226 GTLFRMAKDGEMEMQAQVAEADLATLRAGNSATVTPVGS-NQHFSGRVWQVSPVVDPQTR 284

Query: 252 -GTVQVKIALQ--ALPKGMELGSVVSATANGPAKASIELPWAALTKDLSEPAVWLIDGDG 308
            G  ++ +A      P G    ++ S + N P      LP +A+  D     V++++G  
Sbjct: 285 QGIARIAVAYNDAIRPGGFASATITSGSGNTPL-----LPESAVQSDAKGSYVYIVNGKN 339

Query: 309 KAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRVE 352
           + +   V V +     V I  G+ G E++V + G  L  G +V+
Sbjct: 340 QVERRDVKVGQVSDTGVAITSGITGAERIVTSAGAFLTVGQKVK 383