Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 380 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  204 bits (519), Expect = 3e-57
 Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 7/361 (1%)

Query: 2   GGRIFTCIFGLGLL----TLLSGCGEEKAEPKQHSRVFVQTVQSADFAAAVTL--TGDIQ 55
           GG     + GLG L    +LLSGC +   E        V+TV  A   A   L  TG+I+
Sbjct: 18  GGDAGFRVGGLGTLLLAASLLSGCNDAGREAAAAPLRPVRTVTVAPSVAGEVLSQTGEIR 77

Query: 56  ARVQTDLSFRVGGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQ 115
              +T L FR+ G+++ R VDVG  V   +V+A LD +D +  + SA+A +    A  + 
Sbjct: 78  PTEETALGFRLDGRVVSRAVDVGAVVKQGEVIATLDARDSENQLQSAKADLARAAASERL 137

Query: 116 TAAAFVRQEKLLPKGYTSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAP 175
                 R ++L P G  +RS+ D AQ+   S+ S   +AQA + + +++LGYT L A   
Sbjct: 138 AEQNLKRMKQLAPNGAIARSQLDEAQSNWSSAVSVRESAQASVNSEQDRLGYTRLSAPIA 197

Query: 176 GVITARQAEVGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIK 235
           GVITA  A  GQVV A   +  LA    RDAVFNV E L+     D  +TVSLL NP+IK
Sbjct: 198 GVITAVSANPGQVVNAGQEVVRLATFAGRDAVFNVSERLIASGLNDPLVTVSLLSNPAIK 257

Query: 236 AVGKVREVTPAVAANTGTVQVKIALQALPKGMELGSVVSATANGPAKASIELPWAALTKD 295
             G VR+V+P   A T T +V+I+L   P  M LG+ V      P    I LP +ALT+ 
Sbjct: 258 TQGHVRDVSPLADAQTRTWRVRISLVEPPPEMVLGATVQGEVTLPGGNVINLPASALTRQ 317

Query: 296 LSEPAVWLIDGDGKA-QLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRVEIA 354
              PAV+++D   +  +L  +T+  Y   ++++ DGL  G+KV  AG   L  G +V +A
Sbjct: 318 GGRPAVFVVDPQTQTLRLQPITLRHYSDSQMVVADGLAAGDKVATAGVSKLRAGEKVTLA 377

Query: 355 Q 355
           +
Sbjct: 378 E 378