Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 381 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dadantii 3937

 Score =  209 bits (532), Expect = 1e-58
 Identities = 135/362 (37%), Positives = 196/362 (54%), Gaps = 8/362 (2%)

Query: 2   GGRIFTCIFGLGLL-----TLLSGCGEEKAEPKQHSRVFVQTVQSADFAAAVTLT--GDI 54
           GG       GLG+L     +LLSGC +   EP       V+TV     A    L+  G+I
Sbjct: 18  GGNAIFRAGGLGVLLLLVTSLLSGCNDASNEPAPAPPRPVRTVTVEPSATGEVLSQVGEI 77

Query: 55  QARVQTDLSFRVGGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVK 114
           +   +T L FR+ G+++ R VDVG  V A +V+A LD +D +  + SA+A +    A  +
Sbjct: 78  RPAEETALGFRLDGRVVSRAVDVGTVVKAGEVIATLDTRDSENQLQSAKADLTRAAASER 137

Query: 115 QTAAAFVRQEKLLPKGYTSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADA 174
                  R ++L P G  +RS+ D AQ+   S+ S   +AQA + +A+++L YT L A  
Sbjct: 138 LAEQNLNRMKQLAPNGAIARSQLDEAQSNWASAVSVRESAQASVKSAQDRLEYTRLSAPV 197

Query: 175 PGVITARQAEVGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSI 234
            GVITA  A  GQVV A   +  LA    R AVFNV E L+     D  +TVSLL NP+I
Sbjct: 198 AGVITAVSANPGQVVNAGQEVVRLATFAGRGAVFNVSERLITSGLTDPLVTVSLLSNPAI 257

Query: 235 KAVGKVREVTPAVAANTGTVQVKIALQALPKGMELGSVVSATANGPAKASIELPWAALTK 294
           K  G VR+V+P   A T T +V+++L   PK M LG+ V      P   +I LP +ALT+
Sbjct: 258 KTQGHVRDVSPLADAETRTWRVRVSLIEPPKEMVLGATVQGEVTLPGGTAIALPASALTR 317

Query: 295 DLSEPAVWLIDGDGKA-QLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRVEI 353
               PAV+++D   +  +L  +T+  Y   ++++ DGL  G+KVV AG   L  G +V +
Sbjct: 318 QGDNPAVFVVDPQTQTLRLQPITLRHYSDSQIVVADGLSTGDKVVTAGVSKLRAGEKVTL 377

Query: 354 AQ 355
           A+
Sbjct: 378 AE 379