Pairwise Alignments

Query, 355 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 370 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  110 bits (275), Expect = 6e-29
 Identities = 99/345 (28%), Positives = 159/345 (46%), Gaps = 20/345 (5%)

Query: 12  LLLLGLVTIAFIWILLPFYGAVFWAVILGIIFAPMQRRLQQRFGWNRNLTSLATLSACLI 71
           +L L ++ +A +WI+ PF     WA  + I   P+  RLQ+     R+L  L      ++
Sbjct: 17  VLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVM 76

Query: 72  IAILPVIITSALLVQEGATLYKNIESGKLDVAGYIEQFKNVLPPY-------FQHLLDRF 124
           + I+P+ +    +V     L K I SG + +      + N +P         + +LLD  
Sbjct: 77  VFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLA--WLNTIPVIGAKLYAGWHNLLDMG 134

Query: 125 GMGNLEGLREKIVKSAMQGSQFFATQAFSFGQGTFDFLVSFFIMLYLLYFLLRDGPELVR 184
           G   +  +R  I  +    + +F  QA   G+    F+V   +ML     L   G ++ +
Sbjct: 135 GTAIMAKVRPYIGTT----TTWFVGQAAHIGR----FMVHCALMLLFSALLYWRGEQVAQ 186

Query: 185 KVRT-AVPLAEPQKRRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAV 243
            +R  A  LA  +     L   + +RA   G V+ A+ Q  LGG+      +P A L  V
Sbjct: 187 GIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTV 246

Query: 244 LMAFLSLLPAVGAGIVWGPVAAYFLLSGAIWQGVVLALFGVFVIGLVDNVLRPILVGKDT 303
           LM  LS L  +G   V  P   +   +G    G VL ++   V+G +DNV+RP+L+    
Sbjct: 247 LM-ILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGA 304

Query: 304 KMPDYLILISTLGGLSVFGLNGFVIGPLVAALFMSSWALFVESKP 348
            +P  LIL   +GGL  FG+ G  IGP++ A+    +A +VE  P
Sbjct: 305 DLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVP 349