Pairwise Alignments

Query, 956 a.a., transcriptional regulator from Pseudomonas simiae WCS417

Subject, 976 a.a., winged helix-turn-helix domain-containing protein from Paraburkholderia sabiae LMG 24235

 Score =  374 bits (961), Expect = e-107
 Identities = 291/946 (30%), Positives = 434/946 (45%), Gaps = 36/946 (3%)

Query: 19  GPFRVVPGKRLLTKDGTALDIGGRAFDLLIALLERPGRVVSKRELINLVWPDIIVEEGSL 78
           GP  +   +R    DG  + I  RAFD+L  L+E  G +VSK  ++  VWP+ +V + +L
Sbjct: 5   GPLEIDLARREARVDGKTVRISNRAFDILELLIEAQGGLVSKEAILERVWPETVVGDNNL 64

Query: 79  RFHMTGLRRILGDGEDGARYINTQVGVGYAFV--APIER----AARPLPAPHSLHRGANG 132
           + HM+ LR++LG+  D    I T  G GY  V  AP+ R      R    PH+L   ++ 
Sbjct: 65  QVHMSALRKLLGESRD---LIKTVAGRGYRLVRGAPVARQLGDTGRRTSVPHNLPAYSS- 120

Query: 133 VGRLPPRPSLIGRNADVALVMERLRQPKLFTIVGPGGVGKTSLAVETGHCRAED--DAVH 190
                   +L+GR+  +  V + L   +  T++G GG+GKT +A+E      E     VH
Sbjct: 121 --------ALVGRDDAITHVCDALGNSRHVTLLGSGGIGKTRVAIEVARHLLEQAPGGVH 172

Query: 191 FVDLAQVEGADLVPIALASSLGIAVQAEEPMQVLLAH-LRSQRLLLILDNCEHLIDAVCA 249
            V L+     + V   LAS LG+  +     +  +   +  +R+L++LD+CEH++DA   
Sbjct: 173 VVSLSAASDTNGVLAMLASVLGVHPEGSAATRERIVEAIGGRRMLIVLDSCEHVVDAAAQ 232

Query: 250 IVEQIQDAAPGVTLLATSREPLRARGEHVYRLNPLAFPSELQDLSVEQLLGFPAVQLFVE 309
           +   +  A P + +L+TSREPLR   E +Y + P    SE  D    Q+L   AV LF+ 
Sbjct: 233 LAHHLLTACPQLRVLSTSREPLRIPSETLYWV-PALDVSEPND-DTPQVLRCSAVNLFLM 290

Query: 310 RVCSSNAALALAPGDARLIADMCQRLEGMALPIELAAVRVAVHGVHATHALLGERFSLGW 369
           R  + +A  A       +   +C+RL+G+ L IELAA R A+ G+    A L +RF +  
Sbjct: 291 RARAIDARFAADEPSIHVTGMVCRRLDGIPLAIELAAARAALLGIDTLAAHLDDRFGMLT 350

Query: 370 AGRRTALPRHQTLRAMLDWSYDLLSANERLVFDRLAVFVGPFSLEAASHIAADDWIDPIS 429
            G RTALPRHQTL+A LDWS+ LL   ER    R+ VF   F LEAA  +AAD     + 
Sbjct: 351 GGTRTALPRHQTLKATLDWSHALLDEAERKTLRRIGVFADRFPLEAAIAVAADRVTRELD 410

Query: 430 VAATLDELAAKGLVTVNRSSATASYRLLEMTRAYAREKLQVRGPSEVHALAFRHAAHHME 489
           V A +  L  K LV  +     A++RLLE TR YA +KL   G  E   +A  HA +   
Sbjct: 411 VVAAVAALVEKSLVVASTEPGHAAFRLLETTRMYALQKLDDNG--ERRMVALNHARYLSA 468

Query: 490 QLKHLGETPHAIFASSARLGCQLGNIRSALEWSFGPQGDPGLALPLAAASAQLFLHFSLL 549
            +        A  +  +R+   L  +R+AL W     GD  L   L   +  L    SL+
Sbjct: 469 LIDGDAAGKSAGESWRSRMPALLDEVRAALSWVLSDDGDEALRETLPVNAVFLLYELSLI 528

Query: 550 VECRTWCTRATELLELGYFGTP----TEMELQAALGLVLMFTKGNSAAAEKALLRALDIA 605
            EC  W  RA   L      T     T + L AALG  L+   G +A         L  A
Sbjct: 529 DECCVWARRALAALPADSARTSPRMRTRLRLLAALGASLVLVHGPNAETHTIWNDVLTSA 588

Query: 606 VSLGEHRSQLRLLGRLQIFYERIGDFKASLVWAERAVEIGAVIGKPDAIAVAASLAGICY 665
           V+ G+   + R L  +    +  G    +L +A R     A         +A  L G+  
Sbjct: 589 VASGDEAFEARALWGMWNACQTSGSVHDALEYARRYTAFVADAADVRGAILAYRLMGVAA 648

Query: 666 HLLGNQPLARQTLEHSLRNSLPSQRSLTIHYGFDHRNRTGLALARTLWLMGFPDQARHGA 725
           H  G+Q  AR + E  L      +  + + +  D    +  +LAR LWL G  DQA   A
Sbjct: 649 HYAGDQRCARLSFEQLLEVGDSLRTRMPLGHFADQVLVSRASLARVLWLQGLRDQALALA 708

Query: 726 RQVETEAAALDHATTYCIALVWTL-QIYIWTGDLDTAAERLHTFKSIAEANAFGPYIAAA 784
                EA + D A   C AL   L  + + +G  D A   +   +  +       + AAA
Sbjct: 709 EDAVIEACSKDQAMIVCYALAEALVPLSLLSGKRDCARRAIAVLRDTSSRARLTLWQAAA 768

Query: 785 TGFGAAVAIRAGRPGNAVAVLEETLARLHGMRYELLTTSFEMALAEGLILAGQFEQALAQ 844
             F A +         ++      LA L  +++           A  L+ AG+ ++A   
Sbjct: 769 RCFDAWLRSLDDVSAQSLDGFRAALAELDALKFGAPFAMLAAQYAIALMRAGRHDEAKHV 828

Query: 845 VEATIEHCRRSGDAFPLPELLRIQASI---HKAQVPGDN---KRPEALLQASLSLSQQQG 898
           V++ +  C  +GD + + EL R++  +     A +  D+   +  E    A+L  +  QG
Sbjct: 829 VDSALARCDLAGDFWFIAELRRLRGELPLAGGAVIDSDSDAGRDAETWFVAALEEASAQG 888

Query: 899 SRSWALRSAIDLAALWQAQGRDSEAQYLLGQHREQFSEGFDTHDLR 944
           +RS  LR+A  LA LW   GR++EA  LL        EG D  D +
Sbjct: 889 ARSLQLRAATSLARLWHRLGRETEAAQLLQSACANVCEGRDFDDFK 934