Pairwise Alignments

Query, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  280 bits (715), Expect = 1e-79
 Identities = 191/560 (34%), Positives = 300/560 (53%), Gaps = 22/560 (3%)

Query: 4   SLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVAM 63
           SL+   +S  +  +L+ AV++ L    ++  Q  +++ + +++         Q  V+ A 
Sbjct: 3   SLRNMSISRRLWLILIVAVLMLLALGMLMLKQIHDDLYQAKRQ-------QTQHVVQTAS 55

Query: 64  STIKPLYDAAAPG---DTAARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGK 120
             +   +     G     AA+ Q +  +    Y  D YF+  D   + +    +P   G+
Sbjct: 56  GILTFYHGLETTGVMTREAAQKQALSAVRGLRYDHDDYFWINDLTPVMIMHPANPKLDGQ 115

Query: 121 SFKDNRDPNGVYVNRDLVKVGK-DGTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIGT 179
           +    RDP+G  V  + V + K  G   + Y   +PG    V K  Y +    W  +IG+
Sbjct: 116 NLSAIRDPDGFAVFNEFVILAKAKGAGIVNYRWPKPGAEAPVAKTSYIQLFEPWGWIIGS 175

Query: 180 SVNLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMKA 239
            V +D ++A+ +   ++V K       S +G+A+ L  V+A +  L+A +I+RPL     
Sbjct: 176 GVYVDDVQAEFS---SQVWKA------SFIGLAIAL--VMALLVSLIARSIVRPLQAAVN 224

Query: 240 NLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQVS 299
            + +IA+GE DLTR L    QDE+  L+  FN F  K+  +V Q+    + L     ++ 
Sbjct: 225 AMGNIASGESDLTRSLDTHGQDEVTQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELG 284

Query: 300 DQAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVVD 359
             A ++    ++Q  + + VATAIN+++   Q+VA++A+ A+   +   A+ Q  +  +D
Sbjct: 285 SNATQAHDRSQQQSQQMELVATAINEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNID 344

Query: 360 GSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAGE 419
            S+ QI  L   I  +   + +L  + + I SVL VIRSIA+QTNLLALNAAIEAARAGE
Sbjct: 345 SSLQQIDQLSGTISQAVEVIRTLSAESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGE 404

Query: 420 AGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQANE 479
            GRGFAVVADEVR LA RTQ ST EIQGMI+RLQ  +EAAV+ +  S  A   T  QA +
Sbjct: 405 QGRGFAVVADEVRLLAQRTQKSTAEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQ 464

Query: 480 AGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQT 539
           AGASL  + + +  +N +NA IASA  +Q  V E+IN++V + A    S A   +  +  
Sbjct: 465 AGASLTAIGESLRNLNGLNASIASATLQQAHVVEDINQNVTEAAGLSHSTALAAEQSSVA 524

Query: 540 SRSLAELGQRLGQLVGQFRI 559
           S  L  L ++L  L+ QF++
Sbjct: 525 SAHLRGLSEQLDGLLRQFKV 544