Pairwise Alignments

Query, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 544 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  292 bits (748), Expect = 2e-83
 Identities = 204/561 (36%), Positives = 298/561 (53%), Gaps = 27/561 (4%)

Query: 3   LSLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVA 62
           +S+  ++  + VV V +  VV+ L  +  + G       E  + ++  A   L  Y    
Sbjct: 7   MSISRRLWLILVVAVAML-VVLGLLMLRQIHGDLYQAKAEKTRHVVQTAAGVLAYY---- 61

Query: 63  MSTIKPLYDAAAPGDTAARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGKSF 122
               + L  A      AA+ Q ++++    Y  D YF+  D     +    +P    +  
Sbjct: 62  ----QGLEAAGTLSREAAQQQALQVVRALRYDHDDYFWINDLGPKMIMHPANPKLDDQDL 117

Query: 123 KDNRDPNGVYVNRDLVKVGKD-GTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIGTSV 181
              RDP+G  V  ++V + +      + Y   +PG +E V K  Y +    W  +IG+ V
Sbjct: 118 SAIRDPDGFAVFNEMVALARQQDAGPVNYRWPKPGASEPVAKTSYIQLFKPWGWIIGSGV 177

Query: 182 NLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMKANL 241
            +D ++A+ A       +++    L  +G+A+++ LV+    ML+A +I RPL      +
Sbjct: 178 YVDDVQAEFA-------RQLRDASLVGVGIALLMALVV----MLIARSIARPLQEAVQAM 226

Query: 242 DDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQVSDQ 301
            +IA+GE DLTRRL     DE+  L   FNRF  K+ G+V Q+      L      V D 
Sbjct: 227 GNIASGESDLTRRLDTHGSDEITHLGEHFNRFNGKLQGVVGQLQGAAHALAQSAGHVGDN 286

Query: 302 AQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQ---GASVAAQQTDAEGQAAKRVV 358
           A  ++Q   +Q  + DQVATA+N+++ A Q+VA++A+   G    AQQ    GQ A   +
Sbjct: 287 AGAAQQRSAQQSLQMDQVATAVNEVTYAVQDVAKTAEQAAGEMRTAQQQVTHGQQA---I 343

Query: 359 DGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAG 418
            GS+AQI  L   I  +   +  L    + I  VL VIRSIAEQTNLLALNAAIEAARAG
Sbjct: 344 HGSLAQIDRLSLTIDEAVQVIRDLAGHSTRIGGVLDVIRSIAEQTNLLALNAAIEAARAG 403

Query: 419 EAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQAN 478
           E GRGFAVVADEVR LA RT  ST EI  MI+ LQ+ ++AAV+A+  SS+A   T  QA 
Sbjct: 404 EQGRGFAVVADEVRLLAQRTAQSTAEIHTMIEHLQSQSDAAVKAIDTSSEASRQTVEQAR 463

Query: 479 EAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQ 538
           EAGASLD + Q++  + ++NA IASA  +Q+ V EEINR+V   A      AD  +  + 
Sbjct: 464 EAGASLDAINQVLNNLTALNASIASATLQQSHVVEEINRNVLDTAGLSQQTADAARQSSD 523

Query: 539 TSRSLAELGQRLGQLVGQFRI 559
              +L  L + L QL+ QFR+
Sbjct: 524 AGVALGRLSEELEQLLRQFRV 544