Pairwise Alignments

Query, 219 a.a., glutamine ABC transporter permease from Pseudomonas simiae WCS417

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  111 bits (277), Expect = 1e-29
 Identities = 65/197 (32%), Positives = 109/197 (55%)

Query: 19  GAAQTLSISFLSIAFSTVGGVLYGVLRTLNNRLINAVLRVYLELFRAIPVLVWLYLLFFG 78
           G   TL +S L+   + V G   G+ R      +   +  Y++  RAIPVLV L   +F 
Sbjct: 18  GLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPIVFYIDTQRAIPVLVILVWFYFA 77

Query: 79  LPIFFGLSLPSFWCAVLVLSLWGASEVGEVVRGALHSLPRGQREAGLSIGLSDPQLYGYV 138
           +PI  G+S   FW A++ L+L  A+ V E+VR  + S+  GQ  A L++G+S  Q+   V
Sbjct: 78  VPILTGISFHPFWAALMALTLHIAAYVAEIVRAGIESIRPGQIRAALALGMSRAQIVRKV 137

Query: 139 LLPQALKRMTPPTLNVYTRIIKTSSLAVLIGVVDVIKVGQQIIERTYESVLIYGVLFLFF 198
           +LPQAL RM P   +V +  IK +++A +I V +++K  + I  ++Y  + ++ V+ + +
Sbjct: 138 VLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMKRAETIAGQSYRPIEVFTVVMVIY 197

Query: 199 FFICYPLSAASKVLERR 215
           F I +P +     L +R
Sbjct: 198 FIILFPGTRLIDALYKR 214



 Score = 24.6 bits (52), Expect = 0.002
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 11  VSLPQLGKGAAQTLSISFLSIAFSTVGGVLYGVLRTLNNRLINAVLRVYLELFRA 65
           +++P+L K A      S+  I   TV  V+Y ++     RLI+A+ +    L R+
Sbjct: 167 IAVPELMKRAETIAGQSYRPIEVFTVVMVIYFIILFPGTRLIDALYKRVAHLGRS 221