Pairwise Alignments

Query, 394 a.a., integrase from Pseudomonas simiae WCS417

Subject, 404 a.a., integrase from Pseudomonas simiae WCS417

 Score =  120 bits (300), Expect = 9e-32
 Identities = 103/399 (25%), Positives = 174/399 (43%), Gaps = 30/399 (7%)

Query: 9   KQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTYPETGLKEARARR 68
           KQ +      T  D  GL L V P+G KSW  RF   G++  + +G++PE  LK+AR   
Sbjct: 7   KQVENLTEPGTYEDGDGLRLVVKPTGRKSWLLRFQLAGRRREMGLGSFPEVSLKKARQAA 66

Query: 69  DEAREDIANGVDPRDSRREKKAG------MIAAGGQTFRRVYDEWLAFRKGSISPGTYRV 122
              R  +++G+DP  +R  ++A       +  A    F  +  E+        S    + 
Sbjct: 67  SAKRSQLSDGIDPLAARDLERAAQREAERVSEAKKLKFETLATEYRDAHGAMWSEKWRKG 126

Query: 123 ISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIATG 182
               + L     +G    + I   +V+ +++ +       TA +VR ++ QV   A A  
Sbjct: 127 WLRKLELYAFAHIGKLSAEDIGTPEVLKVLQPIWAT-KTRTADEVRGQIEQVLDAAKARN 185

Query: 183 VIEANPTAE---------MHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAAL 233
           + E    A            A  +K  + +    L + ++P +M  +R  A+      A 
Sbjct: 186 LREGENPARWRGHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLR--ANSTPPSWAA 243

Query: 234 MLMIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPIT 293
            L+I T++R   VR A W E DL+A  W+ P  +MKMR    +PL+ + + +++S +P  
Sbjct: 244 QLLIMTSARAHMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKS-IPRD 302

Query: 294 GDKRYVFINRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNG-----RGYNR 348
               ++F  +  T    G  +AN V     L GI   H  RH F +           Y R
Sbjct: 303 EGSAFLFPGQGKT----GVMHANAVRTL--LHGIGYEHITRHGFRSSFRDWAGECTHYPR 356

Query: 349 DWIERQLAHADSSFIRDVYNHATYLDQRRGMMQEWADLV 387
           +  E  LAH +       Y+ + +LD+RR +M +W+  +
Sbjct: 357 EVCEMALAHDERDQTEGAYSRSDFLDKRRLLMNDWSKFI 395