Pairwise Alignments

Query, 394 a.a., integrase from Pseudomonas simiae WCS417

Subject, 411 a.a., integrase from Pseudomonas simiae WCS417

 Score =  214 bits (545), Expect = 4e-60
 Identities = 131/384 (34%), Positives = 187/384 (48%), Gaps = 3/384 (0%)

Query: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWL-GKQVRISIGTYPETGL 61
           L DT     +P    Y   D  GL   V P+G KSW  R+    GK   + +G YPE   
Sbjct: 11  LADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPEISG 70

Query: 62  KEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPGTYR 121
             AR +  + RED + G +P  S++ +K     A   TF  +  EW   R+ S   GT R
Sbjct: 71  SLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGTSR 130

Query: 122 VISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIAT 181
            +  A+ L V P  G R    I   + +  +R +E++G +    +VR    +++  A  T
Sbjct: 131 RVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARVT 190

Query: 182 GVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALMLMIYTAS 241
           G    NP   +    +       +  +   E+P ++ AI      + ++  L L+   AS
Sbjct: 191 GRAVHNPLEGLSKFLQSRSAEN-YAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLAS 249

Query: 242 RPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGDKRYVFI 301
           RP E+R A WSEIDL   +WT PA +MK RR+H VPLS Q+I  L  +  +TG    +F 
Sbjct: 250 RPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLFP 309

Query: 302 NRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQLAHADSS 361
            R   T P         +   G  G Q+ HGFRH+ ST +N +G++ + IE QL+HA   
Sbjct: 310 GRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHAKEG 369

Query: 362 FIRDVYNHATYLDQRRGMMQEWAD 385
            I  VYN A YL QRR MMQ +AD
Sbjct: 370 -IAGVYNKAVYLPQRRVMMQWYAD 392