Pairwise Alignments

Query, 394 a.a., integrase from Pseudomonas simiae WCS417

Subject, 432 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  124 bits (311), Expect = 5e-33
 Identities = 111/380 (29%), Positives = 176/380 (46%), Gaps = 41/380 (10%)

Query: 34  GVKSWHFRFTWLGKQVRISIGTYP------------ETGLK--EARARRDEAREDIANGV 79
           G K W  R     ++  I +G Y             E GL   EAR +  E R  + +GV
Sbjct: 43  GAKVWALRLKIGERRRDIGLGRYNGKIGLTLEQSVREEGLSLAEARDKAREIRAKVRSGV 102

Query: 80  DPRDSRREKK--AGMIAAGGQTFRRVYDEWLAFRKGSISPGTY-RVISNAMALDVLPTLG 136
           DP + +R +K  A +  A  +TF+   +  ++ + G    G + +  S  +     P LG
Sbjct: 103 DPIEEKRVQKQAAHIGTAKSKTFKECAELCISDKSGEWKNGKHVKQWSATLETYAYPKLG 162

Query: 137 DRQIDAIKRADVIALIRRV-EKRGSVATAVKVRQRMSQVFSYAIATGVIEA-NPTAEMHA 194
              + ++ R  ++ ++R +   +G   TA ++R R+  V ++A   G  +  NP A    
Sbjct: 163 KLPVSSVDRGLILDVLRPIWATKGE--TASRLRGRIETVLNWAKVNGYRDGENPAAWKGN 220

Query: 195 VTEKMGQHKP-----HPFLPFSEMPRIMAAIR--DCASGQQLKAALMLMIYTASRPGEVR 247
           +   + + +      H  LP++E+   MA +R  D  S + L+ A++    T +R GEVR
Sbjct: 221 LEHSLSKRQKLTRGHHASLPYAELGSFMADLRKRDGISARALEFAIL----TVARSGEVR 276

Query: 248 HAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGDKRYVF-INRNST 306
            A W+EIDLD  +W  PA +MK  ++H VPLS   +A+L++ LP      YVF   R   
Sbjct: 277 KATWAEIDLDRKMWVIPAERMKAGKEHRVPLSDAVVALLKA-LPRVAGSDYVFPAPRGGA 335

Query: 307 TAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGR--GYNRDWIERQLAHADSSFIR 364
            + +        MD  GLT     HGFR  F  E  G    Y R+ IE  LAH+ +    
Sbjct: 336 MSDMALTAVLKRMDRAGLT----QHGFRSTF-REWAGEVTAYPREVIEHALAHSLADKAE 390

Query: 365 DVYNHATYLDQRRGMMQEWA 384
             Y   + L +R  +M +WA
Sbjct: 391 AAYQRGSLLPKRVKLMADWA 410