Pairwise Alignments

Query, 394 a.a., integrase from Pseudomonas simiae WCS417

Subject, 409 a.a., Fels-2 prophage protein from Escherichia coli BL21

 Score =  201 bits (510), Expect = 4e-56
 Identities = 127/394 (32%), Positives = 197/394 (50%), Gaps = 9/394 (2%)

Query: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAP---SGVKSWHFRFTW--LGKQVRISIGTYP 57
           LTDT  K  KP E    + D  GL L +AP    G K+W+FR+      K+ ++S+GTYP
Sbjct: 8   LTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTKVSLGTYP 67

Query: 58  ETGLKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWL--AFRKGSI 115
              L +ARA RDE    + NG+DP+    +K   +  A   TF+ V  +WL    +   I
Sbjct: 68  HLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDEKVKTSGI 127

Query: 116 SPGTYRVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVF 175
           S      I  ++  ++  TLGD  I  I+   +   +  +EKRG + T  ++  R++++F
Sbjct: 128 SQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRIISRLNEIF 187

Query: 176 SYAIATGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALML 235
            YA    +IE NP   +     K  +    P LP SE+PR + A+ + +   + +  +  
Sbjct: 188 RYAATEELIEFNPADNLGQRFSKPKKQNM-PALPPSELPRFLVALNNASIRLETRLLIEW 246

Query: 236 MIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGD 295
            + T  RPGE     WS+ID++  +W  PA  MKM++ H VPLS +A+ +L+ M  I+G 
Sbjct: 247 QLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLMKVISGH 306

Query: 296 KRYVFINRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRG-YNRDWIERQ 354
           + +VF +  +    +    AN  +   G  G    HG R +  T     G +  D +E  
Sbjct: 307 REWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTDVLEAA 366

Query: 355 LAHADSSFIRDVYNHATYLDQRRGMMQEWADLVT 388
           LAH+    I   YN A YL +R  +MQ W+D V+
Sbjct: 367 LAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVS 400