Pairwise Alignments

Query, 221 a.a., polar amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 220 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  121 bits (304), Expect = 9e-33
 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 3   FDFAFILSTLPAFLKAVGVTLQVGLIAIATSLLVALINAALLVFRTPYLSRLVALYVELA 62
           FDF  +LS  P  L+ V  T+ +  +     ++V    A        +L  +V  YVEL 
Sbjct: 5   FDFGAVLSEWPLLLRGVAWTIGLTAVGTVLGMIVGTFCAWARANGPAWLRIVVGTYVELI 64

Query: 63  RNTPLLIQLFFVYFALPALGFNISGFWAAIITLTFLGGAYLTEVLRAGVEAVPLAQVESG 122
           RNTP ++QLFF++F LPA G  +S   A++I +    GAY TE++RAG+EA P  Q+E+ 
Sbjct: 65  RNTPFIVQLFFIFFGLPAAGVKLSPEVASVIAMVLNLGAYSTEIIRAGIEATPKGQIEAA 124

Query: 123 KSIGLSDWQLLRHVILPQAGILSLPALFANFIFLLKETTVVSAVAVPEILYTTKSYIALY 182
            S+ LS  Q+   V+LP A     PA+ +  + ++  + V   ++  E+ Y      +  
Sbjct: 125 VSLALSKSQVFLRVVLPPALKKVWPAMVSQIVIVMLGSAVCGQISTEELSYAANLIQSRN 184

Query: 183 YKTYEMLAVLTLICVLLFLPLSLLLSRL 210
           ++ +E   V TLI    +L LS+ L RL
Sbjct: 185 FRAFEAFIVATLI----YLALSVALRRL 208