Pairwise Alignments

Query, 221 a.a., polar amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  112 bits (279), Expect = 7e-30
 Identities = 57/218 (26%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 1   MTFDFAFILSTLPAFLKAVGVTLQVGLIAIATSLLVAL-INAALLVFRTPYLSRLVALYV 59
           M  DF+ +    P  L+   VT+++   A+A   ++ L +    L  +  ++      YV
Sbjct: 1   MDLDFSPVWQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYV 60

Query: 60  ELARNTPLLIQLFFVYFALPALGFNISGFWAAIITLTFLGGAYLTEVLRAGVEAVPLAQV 119
              R TPLL+QLF ++F LP  G  +  F   ++ L    GAY++E++R  ++++   Q 
Sbjct: 61  AAIRGTPLLVQLFILFFGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQT 120

Query: 120 ESGKSIGLSDWQLLRHVILPQAGILSLPALFANFIFLLKETTVVSAVAVPEILYTTKSYI 179
            + +S+G++    +R ++LPQA +  +P L   FI L+K + +VS + + ++++  +  I
Sbjct: 121 MAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKII 180

Query: 180 ALYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHG 217
           ++ Y++ E+   + ++  +L   ++L+L   E++L+ G
Sbjct: 181 SVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQKLRQG 218