Pairwise Alignments

Query, 221 a.a., polar amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  114 bits (286), Expect = 1e-30
 Identities = 65/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 2   TFDFAFILSTLPAFLKAVGVTLQVGLIAIATSLLVALINAALLVFRTPYLSRLVALYVEL 61
           + DFA + S  P F+    +TL++  +A+   + V  + A     +   LSR   +Y+E+
Sbjct: 4   SLDFAPLASYWPVFINGAWLTLKMTALAVVIGVAVGTLVAFAKRSKIRLLSRACTIYIEI 63

Query: 62  ARNTPLLIQLFFVYFALPALGFNISGFWAAIITLTFLGGAYLTEVLRAGVEAVPLAQVES 121
            RNTP L+Q+F +YF L + G  +  F AA++ +     AY  E++RAG+E+VP  Q+E+
Sbjct: 64  VRNTPFLVQIFLLYFGLASFGVRMPTFAAAVLAMVINIAAYAAEIIRAGLESVPRGQIEA 123

Query: 122 GKSIGLSDWQLLRHVILPQAGILSLPALFANFIFLLKETTVVSAVAVPE---ILYTTKSY 178
            + +GLS W++  HV+L  +     PAL + F+ +++ + + S ++  E   I  T +S 
Sbjct: 124 AECLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSD 183

Query: 179 IALYYKTYEMLAVLTLICVLLFLPL 203
                +TY ++A L L+ + LF+ L
Sbjct: 184 TFRSLETYIVVAALYLV-LSLFIKL 207