Pairwise Alignments

Query, 221 a.a., polar amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  120 bits (300), Expect = 3e-32
 Identities = 64/217 (29%), Positives = 121/217 (55%), Gaps = 1/217 (0%)

Query: 1   MTFDFAFILSTLPAFLKAVGVTLQVGLIAIATSLLVALINAALLVFRTPYLSRLVALYVE 60
           M  DF+ +L +    L  +GVTL + ++    +L++        V+   +L   +  Y++
Sbjct: 1   MDLDFSPLLDSWQYLLGGLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPIVFYID 60

Query: 61  LARNTPLLIQLFFVYFALPAL-GFNISGFWAAIITLTFLGGAYLTEVLRAGVEAVPLAQV 119
             R  P+L+ L + YFA+P L G +   FWAA++ LT    AY+ E++RAG+E++   Q+
Sbjct: 61  TQRAIPVLVILVWFYFAVPILTGISFHPFWAALMALTLHIAAYVAEIVRAGIESIRPGQI 120

Query: 120 ESGKSIGLSDWQLLRHVILPQAGILSLPALFANFIFLLKETTVVSAVAVPEILYTTKSYI 179
            +  ++G+S  Q++R V+LPQA +  LPA  +     +K+T + + +AVPE++   ++  
Sbjct: 121 RAALALGMSRAQIVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMKRAETIA 180

Query: 180 ALYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQH 216
              Y+  E+  V+ +I  ++  P + L+  L +R+ H
Sbjct: 181 GQSYRPIEVFTVVMVIYFIILFPGTRLIDALYKRVAH 217