Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  587 bits (1514), Expect = e-172
 Identities = 322/667 (48%), Positives = 403/667 (60%), Gaps = 24/667 (3%)

Query: 8   SRFNLVLPHVDIDLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEAD 67
           S F L L     + +V  F G E + QP+   I++VSE P LDLE+LLH+  YL F +  
Sbjct: 8   SAFTLTLDGEPSEFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQVYLGFDDRG 67

Query: 68  DGLHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGI 127
            G+HG VY + + D GRR TRY +TL P+LAYL H   QRIFQ ++VPQI+A+VLE  GI
Sbjct: 68  RGVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGI 127

Query: 128 LADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQT 187
             D + F L    YP R +CVQ+ E+DL FIQRLC E GIHYHF+HS   HLLVFGDDQT
Sbjct: 128 QRDRFEFRLSGT-YPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLVFGDDQT 186

Query: 188 VFPRL-PVQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAGAAS 246
           VF +  P   Y+   G  ADTPVI+RF V++  R+     RDYDF  PS+ L        
Sbjct: 187 VFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPSLALESEVTGEQ 246

Query: 247 TLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIRDHPDP 306
             PLE   YP  F     GK LA+R LE H+ D   A G  D+P L SG FL++  HP  
Sbjct: 247 LPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPALGSGRFLKLAGHPRE 306

Query: 307 SCNDLWLITSVRHEGYQPQVLEEATPAT---DVFQGYRNRFTATPWQAVHRPSL-RHTKP 362
             NDLWL+T V HEG QPQVLEE+       D  QGYRN F+ATPW A+ RP +    +P
Sbjct: 307 DWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATPWDAIFRPPMPEQPRP 366

Query: 363 TINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGAT 422
           TI G Q A VTGPA  ++HCD YGRVKV+  WDR  E +D SSCWLRVASGWA D +G+ 
Sbjct: 367 TIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCWLRVASGWAHDRYGSV 426

Query: 423 MIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSSLGGEGSNE 482
           +IPRVGMEVLV F++GD D PL+ GCLPNA  +    LP  KTRSV RS SS GG G NE
Sbjct: 427 LIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRSVFRSQSSPGGGGYNE 486

Query: 483 LYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEEHRQVTGDR 542
           L +EDR+G E +YLRAQRD  Q + HD R+ V GE        S   L+ EE R   G+R
Sbjct: 487 LRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDGE--------SHHELQGEELRITHGNR 538

Query: 543 KVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKAGGEHLVIQ 602
              LK  D+L V G  +    QT+ I AGQ        S+VI+ GA ++++AGG+ + + 
Sbjct: 539 LTDLKQDDHLMVGGSRQVRAGQTIQIGAGQ--------SVVIEGGATVTIQAGGQSITLC 590

Query: 603 AGGIFSSRPIALGG--SASVTQLAGAFRVAGMPEVSKVQGTIMNLARQLGADYCPVCEHC 660
           AGGIFSS PI LG   +A+   L    +   +  +      +   + +  A +C  CE C
Sbjct: 591 AGGIFSSVPIQLGSAPAATAAPLTPGLKETVLAVIPAPLSRVQVASLKRSAPFCEECERC 650

Query: 661 REGLCDL 667
           + G C L
Sbjct: 651 KNGQCGL 657