Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 884 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  283 bits (723), Expect = 3e-80
 Identities = 197/573 (34%), Positives = 284/573 (49%), Gaps = 43/573 (7%)

Query: 28  GSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDG---LHGQVYAIGRDDPGR 84
           G E L Q   + + +++ + ++D  ALL + A ++  + + G   L G V + G      
Sbjct: 22  GREALSQVHALDLDLLANSNAIDARALLGKGATVSM-QTETGRRYLGGIVTSFGLAQEDA 80

Query: 85  RTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELGPVVYPPR 144
           R + Y + L P L     R D R+FQ+R+VP+II  VL ++G   +          Y   
Sbjct: 81  RRSFYKMRLRPWLWLATRRSDFRVFQERTVPEIITAVLARYGYPMEQKLRHS----YRAW 136

Query: 145 TFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD-----------QTVFPRLP 193
            +CVQY E D  FI RLCE EGIH+HFRH  D H+LVF DD           +TV    P
Sbjct: 137 NYCVQYGEDDCSFIARLCEHEGIHFHFRHEADRHVLVFADDIAGSHGPLPGGETVRYH-P 195

Query: 194 VQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAGAASTLPLED- 252
            +     GGP      I  +++   +RS +  R  +DFEHP   L     A+     +D 
Sbjct: 196 HEQSGMTGGPEPGER-IHEWELVEEVRSGRHYRSHFDFEHPGADLSFMRRASPGHEHDDH 254

Query: 253 --YQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIRDHPDPSCND 310
             Y++P     H  G+  AR   E     R RA G+S+   L  GH + +  HP    N 
Sbjct: 255 ELYEWPGNHVRHDDGETCARIRNEEQLSGRSRARGRSNLRELAPGHTMRLTGHPRADQNR 314

Query: 311 LWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFT--ATPWQAVHRPSLRHTKPTINGSQ 368
            +L+  V    Y  +   EA+  T   +G   RF   A P     RP     KP  +G Q
Sbjct: 315 QYLLLGV---SYHLRENLEASEGTGHAEGSFQRFAFDALPTSCAWRPPRTTPKPRTDGPQ 371

Query: 369 TATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGATMIPRVG 428
           TA V GPAGE++  D YGRVKVRFHWDRL   D+ +SCW+RV++ WAG  FGA  +PR+G
Sbjct: 372 TALVVGPAGEEIWTDRYGRVKVRFHWDRLGRHDEHASCWVRVSTSWAGAAFGAAALPRIG 431

Query: 429 MEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSSLGGEGSNELYLEDR 488
            EV+V FL+GDPD P+I G + NA   P + LP     S +RS    GG  SN L L+D 
Sbjct: 432 QEVIVDFLNGDPDFPIITGRVHNADEMPAWQLPGQAHLSGIRSREP-GGGRSNHLALDDT 490

Query: 489 RGEELVYLRAQRDLEQ-RIGHDSRLE-VAGERQEVIHGISTTHLKSEEHRQVTGDRKVLL 546
            G+    LR+        +GH +R+E  AG +++   G     L+++ H  +     +L+
Sbjct: 491 NGKVQAQLRSDHQSSSLGLGHIARIEDTAGRKEDRGQGF---ELRTDGHGAIRASEGLLI 547

Query: 547 KASDYLDVHGDSRTHV---AQTLV-IEAGQQLH 575
                 +  G+++ H+    +T+  +  GQ LH
Sbjct: 548 TT----EARGNAQAHIIDMGETVARLADGQALH 576