Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 839 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  258 bits (660), Expect = 6e-73
 Identities = 192/598 (32%), Positives = 273/598 (45%), Gaps = 45/598 (7%)

Query: 21  LQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDG---LHGQVYAI 77
           LQ     G E L Q     ++++  + ++D +ALL + A ++      G   L G V   
Sbjct: 5   LQFHRLVGREALSQANAFDVELLGNSNTIDAKALLGKAATVSMQTGHGGTRHLAGIVTRF 64

Query: 78  GRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELG 137
           G      R   Y + L P       R D RIFQ R VP+I+AEVLE++G     + FE  
Sbjct: 65  GLAREDARHAFYAMRLRPWFWLATKRHDYRIFQDRGVPEIVAEVLERYG-----HPFEQK 119

Query: 138 -PVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQTVFPRLPVQC 196
               Y   T+CVQY ESD  F+ RLCE EGI+Y+ RH    H+LVF DD      +    
Sbjct: 120 LSRNYRNWTYCVQYGESDFDFVSRLCEHEGIYYYVRHEATQHVLVFADD------IANSH 173

Query: 197 YSAPGG------PHADTPV---------IQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDS 241
              PGG      PH  + +         I  ++    +RS +    DYDFE P   L   
Sbjct: 174 SPLPGGETVRYHPHEQSGMTGGEEPAERIYAWETGEELRSGRYGSDDYDFEKPKADLKSR 233

Query: 242 AGAASTLPLED---YQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFL 298
                    +D   +++P  +  ++ G   A+   E     R +A G+S+   L  GH L
Sbjct: 234 RQMPPGHDHDDHEVFEWPGHYLLNSDGDAYAQTRNEELLSARNQAHGRSNLRSLAPGHTL 293

Query: 299 EIRDHPDPSCNDLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPWQAVHRPSLR 358
            +  HP  + N  +L+  V +   +     E T  T      R  F A P     R    
Sbjct: 294 RLAGHPCEAQNRQYLLLGVAYHLQENLRATEGTGDTSGGSIQRFAFDAQPTSMAWRAPRT 353

Query: 359 HTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDG 418
             KP   G QTA V GPAG ++  D +GR+KVRF WDRL  AD+ +SCWLRV+ GWAG  
Sbjct: 354 TPKPRTGGPQTAVVVGPAGHEIWTDQHGRIKVRFRWDRLGRADENASCWLRVSHGWAGGH 413

Query: 419 FGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSSLGGE 478
           FG   +PR+G EV+V FLDGDPD P++ G   NA   P + LP     + +RS    G  
Sbjct: 414 FGTAALPRIGQEVVVDFLDGDPDHPIVVGRFHNADAMPAWQLPRETHLTSMRSRELGGSL 473

Query: 479 GSNELYLEDRRGEELVYLRAQRDLEQ-RIGHDSRLE-VAGERQEVIHGISTTHLKSEEHR 536
             N L L+D  G+    L++        +GH  R+E  AG + +   G     L+++ H 
Sbjct: 474 RGNHLVLDDSAGKVQAQLKSDHQCSSLSLGHIGRIEDTAGRKDDRGQGF---ELRTDGHG 530

Query: 537 QVTGDRKVLLKASDYLDVHGDSRTHVAQ--TLVIEAGQQLHLKSG-ASLVIDAGAELS 591
            +   + +L+      +   ++R HV      V    Q   L  G   + +DAGA  S
Sbjct: 531 VLRAAQGLLVST----EPRPNARAHVTDMGETVARLTQARELHEGMCRMALDAGAHQS 584