Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 791 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  226 bits (577), Expect = 2e-63
 Identities = 179/618 (28%), Positives = 277/618 (44%), Gaps = 81/618 (13%)

Query: 20  DLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQP--AYLAFGEADDGLH-----G 72
           DL      G E L +P    + V+S+N ++D + +L +     + F +AD G H     G
Sbjct: 17  DLMFWRIVGHEALARPSAYELTVLSKNKAIDAKDILGRAFDVVIEFKDADGGTHERHCQG 76

Query: 73  QVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAY 132
                 R     R   Y +TL      L  R + RI Q++ V +++  V E   I     
Sbjct: 77  HAVRFVRAGHVGRHYEYRITLRSWFWLLTKRTNSRILQEKKVLEVLDAVFEDSPIKRFKK 136

Query: 133 AFELGPV-VYPPRTFCVQYAESDLHFIQRLCEEEGIHYHF-RHSVDAHLLVFGDDQTVFP 190
                 +  + PR +CVQ+ ESD  F+ RL E+EGI+Y F  H     + +         
Sbjct: 137 TRADNVIGTHNPRRYCVQHQESDYGFLSRLLEDEGIYYWFDAHGAPGTMHLSDASDIAHE 196

Query: 191 RLPVQ---CYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHL---HDSAGA 244
           +LP      + A     A    + R+       + K   RD DF+     L    D++G 
Sbjct: 197 KLPANDTLHHMATDASEARFNEVSRWVSGRQFGTGKHASRDSDFKAIKKKLGADADASGE 256

Query: 245 ASTLPLEDYQYPAGFTAHTRGKQLAR-RSLELH-QRDRYRALGKSDQPVLRSGHFLEIRD 302
                LE +++P G+     G+  A+ R  EL  +RDR+ AL  +  P + +G   +   
Sbjct: 257 HELASLEMFEFPGGYFTGDEGESRAKLRGDELRARRDRHWAL--TPWPDVAAGRGFKFEG 314

Query: 303 HPDPSCNDLWLITS----VRHEGYQ-----------------PQVLEEATPATDVFQGYR 341
            PD + N  ++I +      H GY+                  +VL +     D  Q   
Sbjct: 315 DPDGTRNGEYIIAACTFVASHRGYEGVSASAASAARPVQAALAEVLRDDAVNADTLQVLE 374

Query: 342 NRFTATPWQAVHRPSLR------------------HTKPTINGSQTATVTGPAGEDVHCD 383
           +   ATP  A  +P                       + T+ G QTA V GP G+++H D
Sbjct: 375 DLIAATPALAAGQPGTSAFLLTVMPADRPFRAPRLTPRVTMPGPQTAIVVGPKGDELHVD 434

Query: 384 VYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGATMIPRVGMEVLVTFLDGDPDRP 443
            +GRVKV FHWDR DE+D+KS+CW+RV+  WAG G+G    PR+G EV+V FL+GDPDRP
Sbjct: 435 DHGRVKVHFHWDRYDESDEKSTCWVRVSQPWAGKGWGGYFAPRIGQEVIVDFLNGDPDRP 494

Query: 444 LINGCLPNALHRPTYPLPLHK-TRSVLRSSSSLGGEGS--NELYLEDRRGEELVYLRAQR 500
           +I G     ++    P+P    T+S  R+ S+  G  +  NE   ED +G+E VYL A+R
Sbjct: 495 IIMG----RVYNDDQPIPFKSHTQSGFRTRSTPKGNAANFNEFRFEDDKGKEQVYLHAER 550

Query: 501 DLE----------------QRIGHDSRLEVAGERQEVIHGISTTHLKSEEHRQVTGDRKV 544
           +L+                + +GHD ++++  +R E + G  T  +  +    V  D+ V
Sbjct: 551 NLDVEVEADETRNVGHDRTKTVGHDEKVKIKNDRTEEVTGNETITIHGKRELTVDKDQYV 610

Query: 545 LLKASDYLDVHGDSRTHV 562
            +K +   +V G   T V
Sbjct: 611 TIKTNHSEEVTGWKSTWV 628