Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 646 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  272 bits (696), Expect = 3e-77
 Identities = 187/574 (32%), Positives = 273/574 (47%), Gaps = 55/574 (9%)

Query: 89  YHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELGPVVYPPRTFCV 148
           Y L L PR+  L   RD+ I+Q  S P I+ +VL    +  D      G   Y PR +CV
Sbjct: 94  YTLELVPRMWLLTLGRDRVIYQNLSTPDIVQKVLGDFAV--DCRTALEG--TYAPREYCV 149

Query: 149 QYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQTVFPRLP----VQCYSAPGGPH 204
           +Y E+   F+ RL EEEGI Y F  + D+H LV  D ++ +   P    +   S  GG  
Sbjct: 150 RYDETAFDFVSRLMEEEGIFYFFTFTADSHTLVLADSKSAYESCPNAQELLVRSGEGGV- 208

Query: 205 ADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAGAASTLPLEDYQYPAGFTAHTR 264
             T  + RF+    + ++     DYDF  P   L  +  +A      DY++P+   A   
Sbjct: 209 GHTHSVTRFESDARLVTKDHEVDDYDFLTPDTSLL-AKNSAKAGRGSDYEFPSRVAASAA 267

Query: 265 GKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIRDHPDPSCNDLWLITSVRHEGYQP 324
             + AR   E HQ       G S    L  G   ++++HP    ND +++ SV H     
Sbjct: 268 SAR-ARIRQEEHQVGSQSGRGDSHCHYLTPGTTFKLKEHPRADLNDEYVVHSVHHHAEN- 325

Query: 325 QVLEEATPATDVFQGYRNRFTATPWQAVHRPSLRHTKPTINGSQTATVTGPAGEDVHCDV 384
                        + Y N F   P     RP     +P + GS TA V GP+G +V  D 
Sbjct: 326 -------------ENYSNSFETLPLNTPFRPPRLTPRPVVAGSHTARVVGPSGHEVWTDQ 372

Query: 385 YGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGATMIPRVGMEVLVTFLDGDPDRPL 444
           +GR+KV+F WDRL + DDKSSCW+RV+  WAG+G+GA  +PR+G EV+V+++DGDPDRPL
Sbjct: 373 HGRIKVQFPWDRLGKKDDKSSCWMRVSQIWAGEGWGALFLPRIGQEVVVSYVDGDPDRPL 432

Query: 445 INGCLPNALHRPTYPLPLHKTRSVLRSSSSLGGEGSNELYLEDRRGEELVYLRAQRDLEQ 504
           ++G + N  H     LP   ++S +RS S  GG   NEL  ED++  E +Y+ AQ+D+  
Sbjct: 433 VSGSVYNGTHVTPVELPSASSQSTIRSRSLPGGSAGNELRFEDKKDAEELYMHAQKDMRT 492

Query: 505 RIGHDSRLE---------------------------VAGERQEVIHGISTTHLKSEEHRQ 537
            I +D   +                           V G R   + G  T   K+   + 
Sbjct: 493 EIENDLTTKVIAGNELHTVTKGNRTVKVDTGNETHSVKGTRALEVTGNETHDNKANFTQT 552

Query: 538 VTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKAGGE 597
           V+G+ ++ +  +  +DV G      AQTL ++AG  L   +G +   +AG  LS K GG 
Sbjct: 553 VSGNYELKVTGNLVIDVTGTLLIKSAQTLDLKAGTDLGANAGINFKAEAGVALSAK-GGA 611

Query: 598 HLVIQAGGIFS--SRPIALGGSASVTQLAGAFRV 629
            L  +A  I S  S   A+ G   VT   G  ++
Sbjct: 612 SLTNEAPSISSKASAMNAVEGGGMVTLKGGLVKI 645