Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 906 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  262 bits (669), Expect = 6e-74
 Identities = 209/647 (32%), Positives = 296/647 (45%), Gaps = 57/647 (8%)

Query: 21  LQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDG---LHGQVYAI 77
           LQ     G E L + +   ++++S +  +D +ALL +PA +A      G   L G     
Sbjct: 5   LQFRKLVGREALSRLYAFDVELLSNSNGIDPKALLGRPATVAMQTESGGTRYLSGIASFF 64

Query: 78  GRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELG 137
           G  +   R + Y +TL P L     R D RIFQ +SVP I+ EVL  +G     YA E  
Sbjct: 65  GLGEEDARQSFYRMTLRPWLWLATLRSDFRIFQNKSVPDILTEVLGGYG-----YAMEQR 119

Query: 138 -PVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQTVFPRL---- 192
               Y    +CVQY ESD  ++ RLCE EGI Y+FRH    H+LVF DD           
Sbjct: 120 LSREYRAWDYCVQYHESDFSYVSRLCELEGIGYYFRHEEHRHVLVFADDIAASHEPLPGG 179

Query: 193 ------PVQCYSAPGGPHADTPVIQRFDVRLG--IRSQKTVRRDYDFEHPSVHLHDSAGA 244
                 P +      G  A +P  + ++ + G  +RS      DYDF  PS  L     A
Sbjct: 180 GTVRFHPSETSGMTSGSRA-SPGERIYEWKSGEEMRSGFHFTDDYDFLKPSADLSGQRQA 238

Query: 245 ASTLP---LEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIR 301
            +       E Y++P G+  H  G+   R   E    +R  A G+S++  L  GH  E+ 
Sbjct: 239 PAGHTHDYFERYEWPGGYKQHEDGEVYTRIRTEEQHSERCLASGRSNKRELAPGHVFELA 298

Query: 302 DHPDPSCNDLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPWQAVHRPSLRHTK 361
           +HP    N  +L+TSV +E  +     E      V    R  F A P     RP     K
Sbjct: 299 NHPRQDQNRKYLLTSVEYELQENMQASEGAGEGSV---QRFAFEAQPADHAWRPRRVTLK 355

Query: 362 PTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGA 421
           P   G QTA V GP  E+   D +GRVKV FHWDRL   ++ SSCW+RV+ GWAGD FG 
Sbjct: 356 PRTRGPQTAIVVGPKNEETWTDRHGRVKVEFHWDRLGARNENSSCWVRVSMGWAGDTFGT 415

Query: 422 TMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRS--------SS 473
             +PRVG EV+V FL+GDPD P+I G + NA + P + LP     S +RS          
Sbjct: 416 AALPRVGHEVVVDFLNGDPDCPIITGRVFNAANMPAWRLPEQANLSGMRSRELNANDGPG 475

Query: 474 SLGGEGSNELYLEDRRGEELVYLRAQRDLEQ-RIGHDSRLE-VAGERQEVIHGISTTHLK 531
             GG   N L L+D  G+    L++        +GH  R++   G   +   G     L+
Sbjct: 476 HAGGSRGNHLVLDDHPGKIQAQLKSDHLCSSLSLGHIGRIDGTEGRTDDRGEG---AELR 532

Query: 532 SEEHRQVTGDRKVLL--KASDYLDVHGDSRTHVAQTLV-IEAGQQLHLKSGASLVIDAGA 588
           ++ H  V   + +LL  +A      H    T + +T+  + A + LH +   +    A  
Sbjct: 533 TDGHASVRAAKGLLLTTEARPGAQAH---ITDIGETVARLTAARDLHERQSQT----AQE 585

Query: 589 ELSLKAGGEHLVIQAGGIFSSRPIALGGSASVTQLAGAFRVAGMPEV 635
            ++ +AG +  V  A  + +      GG+A      GAF   G P +
Sbjct: 586 AMAHEAGDQDAVTAA--LKAQNDAIKGGAAE----HGAFAELGEPHL 626