Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 780 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  270 bits (690), Expect = 2e-76
 Identities = 195/598 (32%), Positives = 289/598 (48%), Gaps = 35/598 (5%)

Query: 21  LQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDG----LHGQVYA 76
           L+  A +G E L Q F   + +V  + +++L+ LL     L    ADDG    L+G V  
Sbjct: 16  LKFRAMRGQEGLSQLFEFEVDMVGTSFNIELKQLLGTSLTLEL--ADDGGPRFLNGTVVR 73

Query: 77  ---IGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYA 133
              +GR +   R   Y   + P L YL    D RIFQ +SVP+++ EVL ++G     + 
Sbjct: 74  FELVGRANETGRHYIYRALVQPWLWYLTRTTDCRIFQNKSVPEVLDEVLGKYG-----FE 128

Query: 134 FELGPVV-YPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQTVFPRL 192
           FE      Y P   CVQY ESD  F+ RL E EGI YHF H    HLLV  DD   +  L
Sbjct: 129 FEKRLTASYRPWENCVQYQESDFAFVSRLMEHEGIAYHFEHGNGTHLLVLSDDTGGYSPL 188

Query: 193 PVQCYSAPGGP----HADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLH----DSAGA 244
           P     A        +A  P I ++ V   I S + +  D+DF+     L     D  G 
Sbjct: 189 PGHATIAYRPRDRVLNAMEPCIDQWRVSEQITSGRVMLDDFDFKKSRASLQSVQQDPKGH 248

Query: 245 ASTLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIRDHP 304
             +   E Y++  G++ H +G   A+  L+  Q     A G ++   +  G+  ++   P
Sbjct: 249 DHST-YEVYEWLGGYSEHQQGDAYAKIRLQELQCAHELARGHTNVVGMAPGYLFQMTHCP 307

Query: 305 DPSCNDLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPWQAVHRPSLRHTKPTI 364
             + N  +L+T  R++  +P+     +  +         FT  P    +RP+    +P  
Sbjct: 308 READNREYLVTETRYDLQEPEYSSGGSSESVC----EFDFTVLPSSVAYRPARNTPRPRT 363

Query: 365 NGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGATMI 424
           NG QTATV GP  E++  D +GRVK++F WDR  + D+ SSCW+RV+S WAG  FG   +
Sbjct: 364 NGPQTATVVGP--EEIWTDRFGRVKLQFRWDRYGQGDENSSCWVRVSSSWAGANFGTMHM 421

Query: 425 PRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSSLGGEG--SNE 482
           PRVG EV+V F+ G+PDRP+I G + N+   P + LP + T S + + SS GG    +N 
Sbjct: 422 PRVGQEVIVDFIGGEPDRPIITGRVYNSDQMPPWELPANATASGILTRSSSGGAANQANM 481

Query: 483 LYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEEHRQVTGDR 542
           L  EDR G E ++L A+R+L+  +  D      G R  +I G  +   +  E R +T   
Sbjct: 482 LRFEDRTGSEQIWLHAERNLDVEVEADETHTTDGTRTTLIKGHESATYQDGETRDITAGA 541

Query: 543 KVLLKASDYLDVHGDSRTHVAQTL--VIEAGQQLHLKSGASLVIDAGAELSLKAGGEH 598
           +  +   D  DV G     V+  +   I  G+   L  G    I  G   ++ +GG H
Sbjct: 542 RETITGGDTRDVTGGFTETVSGGVNQTISGGKTRMLSGGLQDTITGGVNSAI-SGGYH 598