Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 800 a.a., type VI secretion system tip protein TssI/VgrG from Variovorax sp. OAS795

 Score =  219 bits (558), Expect = 4e-61
 Identities = 199/704 (28%), Positives = 306/704 (43%), Gaps = 90/704 (12%)

Query: 28  GSEVLDQPFFIHIQVVSENPSLDLEALLHQP--AYLAFGEADDGLHG---QVYAIGRDDP 82
           G E L +P    + V+S+N +LD + +L +     + F +A+ GLH    Q +A+  +  
Sbjct: 25  GHEALARPSTYELTVLSKNRALDAKDILGRAFDVVIGFQDAEGGLHERHCQGHAVRFERT 84

Query: 83  GR--RTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELGPV- 139
           G   R   Y + L      L  R + RI Q + V +++  V E   I           + 
Sbjct: 85  GHVGRHFEYRIGLRSWFWLLTKRSNSRILQDKKVLEVLDAVFEDSPIKRFKKTKADNVIG 144

Query: 140 VYPPRTFCVQYAESDLHFIQRLCEEEGIHYHF-RHSVDAHLLVFGDDQTVFPRLPVQC-- 196
            + PR +CVQ+ ESD  F+ RL E+EGI+Y F  H     + +         +LPV+   
Sbjct: 145 THNPRRYCVQHQESDYQFLSRLLEDEGIYYWFDAHDAPGTMHLSDASDIAHDKLPVEGTL 204

Query: 197 -YSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAGAASTLPLEDYQ- 254
            + A     A    I R+       + K   +D DF+     L  + G      L +++ 
Sbjct: 205 RHVAGDASEARHNEISRWVSARQFDTGKYASQDSDFKAIKKKLEAAGGEPDKHELAEFEA 264

Query: 255 ------YPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIRDHPDPSC 308
                 Y +G  A  +GK    R  E+  R R R    +  P + +G     +D PD + 
Sbjct: 265 FEYAGGYFSGADADDKGKL---RGEEIGAR-RQRHWALTTWPDVAAGRSFTFQDDPDGTR 320

Query: 309 NDLWLITS----VRHEGYQP---------------------QVLEEATPATDVF------ 337
           +  ++I +      H GY+                       V  EA PA +        
Sbjct: 321 DGDYIIAACTFVASHPGYESLTHDLPSATPERALREALADDAVNAEALPALEALIADAPA 380

Query: 338 -----QGYRN-RFTATPWQAVHRPSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVR 391
                QG      TA P      P     +  + G Q+A V GPAGE++H D +GRVKV 
Sbjct: 381 LRTGPQGTSAFLLTAIPVDVPFHPPRLTPRVVMPGPQSAIVVGPAGEEIHADDFGRVKVH 440

Query: 392 FHWDRLDEADDKSSCWLRVASGWAGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPN 451
           FHWDR D++D+KS+CW+RV+  WAG G+G   IPR+G EV+V FL+GDPDRP+I G    
Sbjct: 441 FHWDRYDKSDEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLNGDPDRPIIVG---- 496

Query: 452 ALHRPTYPLPL-HKTRSVLRSSSSLGGEGS--NELYLEDRRGEELVYLRAQRDLEQRIGH 508
            ++    P+P    T+S  R+ S+  G  S  NE   ED++G E VYL A+++ +  + +
Sbjct: 497 RVYNDDQPIPFGSHTQSGFRTRSTPKGSASNCNEFRFEDKKGSEQVYLHAEKNQDIEVEN 556

Query: 509 DSRLEVAGERQEVIHGISTTHLK--------SEEHRQVTGDRKVLLKASDYLDVHGDSRT 560
           D    V  +R + I    TTH+K        + E   V G R   +  ++ + +H +   
Sbjct: 557 DETHWVGHDRAKTIDHDETTHVKHDRTETVDNNETITVHGQRTETVDKNETITIHQNRTE 616

Query: 561 HVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKAGGEHLV------------IQAGGIFS 608
            V     I  GQ   +  GAS       + +   G    +            +QA  + +
Sbjct: 617 TVDLNETISIGQNRSITVGASETATVALQRTHSVGINETITVGAAQEITVGAMQAVTVGA 676

Query: 609 SRPIALGGSASVTQLAGAFRVAGMPEVSKVQGTIMNLARQLGAD 652
           S+ I +G + SVT  A      G   V KV      LA  +G+D
Sbjct: 677 SQTINVGANQSVTIGADQTESIGANRVVKVGA---KLAVNVGSD 717



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 532 SEEHRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELS 591
           +++   +  +R V + A   ++V  D+   V         +      G   V+DAG E+S
Sbjct: 692 ADQTESIGANRVVKVGAKLAVNVGSDASMTVGAGRSASIDKDDSFSVGKKFVVDAGDEIS 751

Query: 592 LKAGGEHLVIQAGGIFSSR--PIALGGSASV 620
           L  G   +V++  G  + R   I + GS SV
Sbjct: 752 LTTGSASIVMKKDGSITIRGKDILIEGSGSV 782