Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 618 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  263 bits (671), Expect = 2e-74
 Identities = 177/565 (31%), Positives = 280/565 (49%), Gaps = 31/565 (5%)

Query: 9   RFNLVLPHVDIDLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADD 68
           + N++    + +  +  F G+E L + +   + ++S+   + L++L+   A +   E  +
Sbjct: 18  KLNILTQTANDEFLLEHFSGTEELSKLYEFDLALLSQQSDVKLKSLIGSQATVEI-ELSN 76

Query: 69  G----LHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQ 124
           G    ++G V             RY   L P L  L  R D RIFQ++SV  +++EV   
Sbjct: 77  GSFRHINGYVQRFSTQGSDGGYVRYAAVLGPWLWMLTCRFDTRIFQEKSVQAVVSEVFAG 136

Query: 125 HGILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGD 184
            G LA  Y F +   +    ++  QY ESD +F+QRL E EG+ Y+F H+ D+HL+V  D
Sbjct: 137 FGTLAK-YEFRVSKPL-KSHSYITQYRESDFNFVQRLLESEGLFYYFEHTADSHLMVITD 194

Query: 185 DQTVFPRLP----VQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPS----V 236
           D +    LP    ++ +SA     AD+  I ++     ++S +   R +D+  P     V
Sbjct: 195 DSSTLLPLPEQPQIRYHSASVTETADS--ITQWQSTRQLQSGQIAVRTFDYRQPRNFLPV 252

Query: 237 HLHDSAGAASTLPLEDYQYPAGFT--AHTRGKQLARRSLELHQRDRYRALGKSDQPVLRS 294
            +            E Y +P  +T  ++  G+ + R  +E  +       G+S+   ++ 
Sbjct: 253 TMQSLNQQGDVDRFEIYDFPGQYTHGSYEDGEAIVRNRIEALELMGKTFYGESNCRAMKP 312

Query: 295 GHFLEIRDH----PDPSCNDLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPWQ 350
           G+  E+  H       + N  +L+ SV H G    +  +         GY NRF     +
Sbjct: 313 GYTFELTQHYLHDTGAAENRKFLLLSVEHRGSNNYMTGDQA-------GYVNRFVCVRKK 365

Query: 351 AVHRPSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRV 410
             +RP L   KP ING QTA V GP GE++  D  GRVK++FHWDR  + +D+SSCW+RV
Sbjct: 366 IAYRPQLNTRKPLINGPQTAIVVGPPGEEIFTDELGRVKLQFHWDRQGQFNDQSSCWVRV 425

Query: 411 ASGWAGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLR 470
           A   A  GFG+  IPRVG EV+V FLDG+PDRPLI G L N+ + P + LP +KT+S   
Sbjct: 426 AQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSTNTPPWSLPANKTQSGFL 485

Query: 471 SSSSLGGEG-SNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTH 529
           + S  G  G +N    ED+ G E + + A+R+++  I  D   +V   R   + G  T  
Sbjct: 486 TRSMKGDGGTANFFRFEDKAGAEQIIMHAERNMDTEIELDETHDVGNNRSITVGGTHTET 545

Query: 530 LKSEEHRQVTGDRKVLLKASDYLDV 554
           +K +   QVT     L   + ++ V
Sbjct: 546 VKKDTVVQVTEGSYTLQVDNQFIQV 570