Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  297 bits (760), Expect = 1e-84
 Identities = 192/616 (31%), Positives = 297/616 (48%), Gaps = 40/616 (6%)

Query: 22  QVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDGL---HGQVYAIG 78
           +V++F+  E +  PF + ++++S    +D   LL +P      + +  +   HG V +  
Sbjct: 21  EVVSFELREGISAPFELELKLISFENDIDFGHLLDKPVLFTILDGERPVRYVHGLVSSFS 80

Query: 79  RDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELGP 138
           + + G   T YH  + P+LA    R + RIFQ ++VPQI+  +L++ GI  D Y      
Sbjct: 81  QGESGFYRTYYHALVEPQLARARLRSNWRIFQHKTVPQILELMLKRQGI--DQYELRAS- 137

Query: 139 VVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLV----------------- 181
           + +  R FCVQ  E+DL FI RL  EEG  Y F HS   H L+                 
Sbjct: 138 MDHQVREFCVQAGETDLAFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIK 197

Query: 182 -------FGDD-QTVFPRLPVQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEH 233
                  FGDD + V P   +  Y A  G     P ++R      +R+ + V+RD+ F H
Sbjct: 198 ADHEDEGFGDDDEPVGPDSVL--YQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTH 255

Query: 234 PSVHL-HDSAGAASTLPLEDYQY---PAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQ 289
           P+    H +AG       +DY+Y   P  +     GK      +   + D   A  + D 
Sbjct: 256 PAYRQEHRAAGPFLEHQSKDYEYFDYPGRYKRDAVGKPFTENRITALRHDVRIAEVQGDD 315

Query: 290 PVLRSGHFLEIRDHPDPSCNDLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPW 349
             L+ G    + DHP    N  W +++V HEG QP  L+E     D    Y  +    P 
Sbjct: 316 VRLQPGLSFTLTDHPREDLNVHWRVSTVHHEGSQPTSLQEEAAGADQGTRYEQKAVLVPG 375

Query: 350 QAVHRPSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLR 409
           +   RP+    KP ++G   ATV GP GE+++CD +GRVKV F WDR  + ++ SSCWLR
Sbjct: 376 RTEWRPAPL-PKPRVDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESQNNEFSSCWLR 434

Query: 410 VASGWAGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVL 469
           V+ GWAG  +G+  IPR+G +V++ +++GDPD+P+I G        P Y LP HKTR  +
Sbjct: 435 VSQGWAGGSWGSMAIPRIGQDVIIHYVNGDPDQPMITGRTYCGNQLPPYDLPRHKTRMTI 494

Query: 470 RSSSSLGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTH 529
           +S +   G+G NEL  ED  G+E V++ AQRD    + HD   +V  +R+E +    +  
Sbjct: 495 KSQTH-KGDGFNELRFEDELGQEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDESIL 553

Query: 530 LKSEEHRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAE 589
           +  +    V  D ++ +     LD+  +    +A+  V   G   H +  A+     G  
Sbjct: 554 IGHDRTETVGNDERITIGQDAALDIGRNHTIRIAKDRVENIGNHRHDQIAANHHTRIGGN 613

Query: 590 LSLKAGGEHLVIQAGG 605
              +  G H  ++A G
Sbjct: 614 FEQRVEG-HAELEARG 628