Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 816 a.a., VgrG protein from Agrobacterium fabrum C58

 Score =  214 bits (546), Expect = 1e-59
 Identities = 177/635 (27%), Positives = 284/635 (44%), Gaps = 63/635 (9%)

Query: 30  EVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAF----GEADDG-----LHGQVYAIGRD 80
           E + Q F I + V ++  ++  E L+ +   ++     G+ D G      +G V  +   
Sbjct: 37  EGVSQLFEIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGGGVRRPFNGLVTELHEG 96

Query: 81  DPGRRTTR-YHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELGPV 139
            P  R  R Y LT+ P++  L+ R D RI+  ++  +I+  +  +HGI A   +  + P 
Sbjct: 97  PPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEHGIPAPDTSGIISPP 156

Query: 140 VYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQTVF----PRLPVQ 195
             P + + VQ+ E+DL ++ R  EE+G+ Y F H   +H L   D  + +    P    +
Sbjct: 157 --PAQHYSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPAAQGE 214

Query: 196 CYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAGAASTLP----LE 251
                    +D   I  +  R    S +    D++FE P +       +   +P     E
Sbjct: 215 GMVRLAQGSSDRNHINDWARRFSYVSGQRAGADWNFETPGMVPGTMTPSLVQMPDATKRE 274

Query: 252 DYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIRD--HPDPSCN 309
            Y+YPA        ++  +   +  + D  R  G S   +L +G      +  HP+ +  
Sbjct: 275 LYEYPARIKTVEEAERAQKLRTQAIEADHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYE 334

Query: 310 DLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPWQAVHRPSLRHTKPTINGSQT 369
           +  +I    H      +++ +         YRN F A P +    P     +P I G+Q 
Sbjct: 335 E-HVIVRASHS-----IVDLSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQV 388

Query: 370 ATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGATMIPRVGM 429
           A V GP GE++H D YGR+K+ F WDR  + D   +CW+RV+  W G  +GA +IPR+GM
Sbjct: 389 AIVAGPEGEEIHPDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGM 448

Query: 430 EVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSSLGGEGSNELYLEDRR 489
           EV+V F+DGDPD+PL+ G + N  +   Y LP +KTR VLRS+S   G+G NE+  ED  
Sbjct: 449 EVMVAFVDGDPDKPLVIGVVNNPANSVPYDLPANKTRMVLRSNSH-KGDGFNEITFEDEA 507

Query: 490 GEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEEHRQVTGDRKVLLKAS 549
           G+E  +  AQ+D   R+ +D                 T  +   E   V G+R V +  +
Sbjct: 508 GKENQFFHAQKDQTTRVLND----------------RTKRIDRHEVASVGGNRAVEVSGN 551

Query: 550 DYLDVHGDSRTHVAQT----------LVIEAGQQLHLKSGASLVIDAG-----AELSLKA 594
              ++ G   T V  T          +   +GQ   L S A+ +   G     A  +  A
Sbjct: 552 QKHEIGGSVNTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGGGGPGVAAFATTLA 611

Query: 595 GGEHLVIQAGGIFSSRPIALGGSASV---TQLAGA 626
                 + AGG+ S   +  G S      T LAG+
Sbjct: 612 SSALGFLGAGGLSSREGVVSGPSPRADAGTALAGS 646