Pairwise Alignments

Query, 334 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 363 a.a., hypothetical protein from Variovorax sp. SCN45

 Score = 95.1 bits (235), Expect = 2e-24
 Identities = 84/327 (25%), Positives = 137/327 (41%), Gaps = 9/327 (2%)

Query: 11  TRALRKQLDALGLDSAALCLQAGLDPQKMDDPNARYPLSATTRLWELAVQASGDPAIGLR 70
           T A    L   G  ++ L    GLD  ++   + +   +    +   AV  S  P     
Sbjct: 23  TAACVMALTQSGASASELLRGTGLDESELLSYSRKVSYAQMQTILRNAVALSPGPEAAFE 82

Query: 71  VSRFVSATTFHALGYALVASGSLREVFERIVRYHQVVSDALSLELSGDGER--YRFRLLQ 128
             R VS  +    G  + ++ + RE+ E +V+Y  V+   ++ +         + +  L 
Sbjct: 83  AGRRVSLASLGVWGLGMTSARTYRELAEFVVKYQWVLGPMVAFDFHEVDANAWWTYTPLL 142

Query: 129 LPGSPAPAFEAIDAFA-AIYVRTCRNRLGREYAPLAVYLRRPEPVDPKPWHTVFRAPVFF 187
           +    +  ++    FA  +  R      G  +  LA+ LR   P     +   F  P+ F
Sbjct: 143 VSDPRSTEYQMSMEFALCMGYRMSEIAFGPGFKALAISLRYDAPAHASLYEHFFGCPILF 202

Query: 188 DAEEDRLEFAAADFDSHLDDANP---ELAEHNETVLKRTLAQLQPLTWERKVRAAIEAQL 244
               D   F  A  +  L +AN     +      VL + L+    +  E +VR  + AQ 
Sbjct: 203 GQPHDGFHFDPALLECELPNANAISMAMVRAGCEVLLKKLSTRGGI--EARVRELLSAQR 260

Query: 245 PDGEPSA-ERIAQALHLSLRSLQRHLADEGCRFDALLSECRENLALLHLRDPHCSLAEIS 303
           P+    A + IA  L ++ R+L R L + G  F  L S    + A+ +LRD   +  EI+
Sbjct: 261 PEKPALAVDEIANELDMNPRTLHRKLKEAGTSFRGLRSNVLMDQAIAYLRDTDLTQEEIA 320

Query: 304 HLLGFADTSSFNRAFKRWTGMTPGQFR 330
             LGF+D S+F +AFKRWT   PG FR
Sbjct: 321 ARLGFSDGSNFRQAFKRWTNRQPGDFR 347