Pairwise Alignments

Query, 166 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 3e-26
 Identities = 57/156 (36%), Positives = 100/156 (64%), Gaps = 6/156 (3%)

Query: 11  FFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRV--LESKSSEVEQPRAYLHQTARNIAVD 68
           F EHY++L+   TRR+ +RQ+A D+A +T++++  ++ ++  V   R+++ + A N+A+D
Sbjct: 13  FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAID 72

Query: 69  AYRREDRREAITLE---AFDQRSPNSGDPEHFMHAIQLADSIERALSELPLNCRKIFIWQ 125
           A RRE R  A   +   A +   P    PE  + A +    +++AL +LP N R+  +  
Sbjct: 73  ALRREQRIAASHDDSDGACEVACPAPA-PEAALLARERLQILDQALLQLPDNARQALLLN 131

Query: 126 KIEGLTQQEIAERLGLSKNMVEKYMIRTLRHLRDRL 161
           ++EGLTQ+++A+RLG+S++MV KY+ + LRH R RL
Sbjct: 132 RVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRL 167