Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  152 bits (385), Expect = 2e-42
 Identities = 80/167 (47%), Positives = 111/167 (66%), Gaps = 1/167 (0%)

Query: 1   MSSDHPLDHAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVR-LLNARRQQTLQQ 59
           M+S H   + A+   Y  HH WL  WL RR GC   AADLAQ+TFVR LL  +   TL++
Sbjct: 1   MTSAHAAANGAMHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLRE 60

Query: 60  PRAYLSSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQ 119
           PRAYLS++A+ ++ + +RR+ LERAYLE+LA  P+    S E RL +L +L+ ID +LD 
Sbjct: 61  PRAYLSTLAKGVVSEHWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDG 120

Query: 120 LKPRVREAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHACYRL 166
           + P+ REAF+L+QL+GLT A IA RL +S+ TV+R + +    C  L
Sbjct: 121 MSPKAREAFVLSQLEGLTYAAIAERLQISERTVKRYMQQGFERCLAL 167