Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 75.5 bits (184), Expect = 5e-19
 Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 23  LRGWLSRRTGCREHAADLAQETFVRLLNARRQQT-LQQPRAYLSSIARSLMIDQYRRREL 81
           L  + +R    R+ AAD+ QE++ R+L   R    +  PRA L   AR +M+DQ+RR  L
Sbjct: 9   LLNFCARALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMVDQHRRNLL 68

Query: 82  -ERAYLESLAHFPQVEVPSEETRLLILDSLERIDRL---LDQLKPRVREAFLLAQLDGLT 137
            E   L +L+   Q  +P+      IL S + +      ++ L PR REAF+L   DGL+
Sbjct: 69  REHDDLAALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAFVLHVFDGLS 128

Query: 138 CAQIALRLGVSKATVERDLSKALHAC 163
            A+IA R+G S + +E+ +++   AC
Sbjct: 129 HAEIAARMGASVSMIEKHVARGRLAC 154