Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  158 bits (400), Expect = 4e-44
 Identities = 84/164 (51%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 1   MSSDHPLDHAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTL-QQ 59
           M    P  +  +  LY  HH WL+GWL R+ G    AADLA +TFVRLL+ +       +
Sbjct: 1   MPPAEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNE 60

Query: 60  PRAYLSSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQ 119
           PRA L+ IA+ L++D++RR+++ERAYLE++AH PQ EVPS ETR LIL++L RID +L  
Sbjct: 61  PRALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRD 120

Query: 120 LKPRVREAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHAC 163
           +  RVR+ FLL+QLDGLT AQIA +L VS  T++RD+  A  AC
Sbjct: 121 MPARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164