Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 79.0 bits (193), Expect = 4e-20
 Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 1/142 (0%)

Query: 19  HHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQPRAYLSSIARSLMIDQYRR 78
           H+  L G  +R+   R+ A DL  + FVR+L   R+Q ++QPRAYL   AR++ +D +RR
Sbjct: 10  HYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPREQ-VEQPRAYLHQAARNIAVDGFRR 68

Query: 79  RELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQLKPRVREAFLLAQLDGLTC 138
            +  +A                E  +  L+  + ++R L +L    R+ F+  +L+GLT 
Sbjct: 69  EDRRQALEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKLEGLTQ 128

Query: 139 AQIALRLGVSKATVERDLSKAL 160
           A+IA R+G+SK  VE+ + + L
Sbjct: 129 AEIAERMGLSKNMVEKYMIRTL 150