Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  238 bits (608), Expect = 3e-68
 Identities = 118/170 (69%), Positives = 136/170 (80%)

Query: 1   MSSDHPLDHAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQP 60
           M  +  L    +  LY +HH WLRGWL  R GC EHAADLAQ+TFVRLL AR+   L++P
Sbjct: 1   MQINDTLKPTEVALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEP 60

Query: 61  RAYLSSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQL 120
           RAYLSSIAR LMIDQ+RRR LERAY E LAH P+ EVPSEE +L+ILDSLER+DR L QL
Sbjct: 61  RAYLSSIARGLMIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQL 120

Query: 121 KPRVREAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHACYRLRYVE 170
           KPRVR+AFLLAQLDGL+  Q+A RLGVS+ATVERDL+KAL ACYRLRY +
Sbjct: 121 KPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGACYRLRYAD 170