Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 409 a.a., integrase arm-type DNA-binding domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  246 bits (628), Expect = 9e-70
 Identities = 152/403 (37%), Positives = 217/403 (53%), Gaps = 13/403 (3%)

Query: 11  LADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPEISG 70
           L+D T+   +P     R  DG GLY  V P+G K W L+Y+   GK   L LG YP+   
Sbjct: 3   LSDATVRKAKPSDKPQRLFDGGGLYLEVAPSGGKWWRLKYRF-GGKEKRLSLGTYPDTGL 61

Query: 71  SLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGTSR 130
           + AR++    R+  + G +P V ++A K A    A N+FE + REW   ++  W +G   
Sbjct: 62  ADARERRDAARKLLAQGVDPGVQRKAEKAAGVDRAANSFEVVAREWLAVKKPEWTAGQFA 121

Query: 131 RVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARVT 190
           +  G LE H FP  G     +I   E       + ++G IEQ  R+R     ++  A  T
Sbjct: 122 KECGRLENHAFPRIGALPVADIGVGEIRPLFAYLIKQGHIEQAHRLRHQLSRVFRFAVAT 181

Query: 191 GRAVHNPLEGLSKFLQSRSAENYAHVSI-EELPALLRAINSYPHAKDVRIGLRLLSLLAS 249
            RA  +P   L   L SR+ +N+  ++  E +  L+RAI+ +     V+  L+L  L   
Sbjct: 182 ERASRDPAADLRDTLPSRNPQNHPTITDPERVGELMRAIDGFTGTLPVQCALKLAPLWFC 241

Query: 250 RPSEIREARWSEIDLTKK--LWTIPAERMKRRRE---------HVVPLSRQSIEALTELR 298
           RP EIR A W+  DL  +   +T+P    K ++          H+VPLSRQ++E L ELR
Sbjct: 242 RPGEIRMAEWTHFDLDGEHPSYTVPPMNRKLKKAAKENPSTPPHIVPLSRQALEILRELR 301

Query: 299 TLTGAYPLLFPGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENH 358
            LTG    LFPG +D     S+     AL R+GY G  TGHGFRH+A T+L E G++   
Sbjct: 302 QLTGHGRYLFPGARDPKRHMSDGAVNAALARIGYKGIITGHGFRHMARTLLGELGWNPEA 361

Query: 359 IEAQLSHAKEGIAGVYNKAVYLPQRRVMMQWYADHLDELVEGN 401
           +E QLSH + G+AGVYNKA +LP+RR +MQ +AD+LD L  G+
Sbjct: 362 LERQLSHKEPGVAGVYNKAQHLPERRKVMQAWADYLDSLRAGS 404