Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 404 a.a., integrase from Pseudomonas simiae WCS417

 Score =  126 bits (317), Expect = 1e-33
 Identities = 110/400 (27%), Positives = 189/400 (47%), Gaps = 31/400 (7%)

Query: 22  EHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPEISGSLARQKAAQLR 81
           E  TY  +DG+GL   VKP G+KSW LR++   G+   +GLG +PE+S   ARQ A+  R
Sbjct: 14  EPGTY--EDGDGLRLVVKPTGRKSWLLRFQLA-GRRREMGLGSFPEVSLKKARQAASAKR 70

Query: 82  EDASTGKNPLVSKQARKVADQVAANNT------FEALGREWFEARRTSWESGTSRRVLGA 135
              S G +PL ++   + A + A   +      FE L  E+ +A    W     +  L  
Sbjct: 71  SQLSDGIDPLAARDLERAAQREAERVSEAKKLKFETLATEYRDAHGAMWSEKWRKGWLRK 130

Query: 136 LELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARVTG-RAV 194
           LEL+ F   GK    +I   E ++ L+ +           VR   +++ D A+    R  
Sbjct: 131 LELYAFAHIGKLSAEDIGTPEVLKVLQPIWATKT-RTADEVRGQIEQVLDAAKARNLREG 189

Query: 195 HNP---------LEGLSKFLQSRSAENYAHVSIEELPALLRAI--NSYPHAKDVRIGLRL 243
            NP         L   ++  ++R  E++  +  +++P L+  +  NS P +       +L
Sbjct: 190 ENPARWRGHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLRANSTPPSW----AAQL 245

Query: 244 LSLLASRPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGA 303
           L + ++R   +R ARW E DL    W++P ERMK R   V+PL+ + +  +  +    G+
Sbjct: 246 LIMTSARAHMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSIPRDEGS 305

Query: 304 YPLLFPGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNE-QGFDENHIEAQ 362
              LFPG+    +  +N V  + L  +GY    T HGFR        E   +     E  
Sbjct: 306 -AFLFPGQGKTGVMHANAVRTL-LHGIGYE-HITRHGFRSSFRDWAGECTHYPREVCEMA 362

Query: 363 LSH-AKEGIAGVYNKAVYLPQRRVMMQWYADHLDELVEGN 401
           L+H  ++   G Y+++ +L +RR++M  ++  ++  ++ +
Sbjct: 363 LAHDERDQTEGAYSRSDFLDKRRLLMNDWSKFINTAIKAS 402