Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 395 a.a., integrase domain-containing protein from Pectobacterium carotovorum WPP14

 Score =  211 bits (536), Expect = 4e-59
 Identities = 125/384 (32%), Positives = 197/384 (51%), Gaps = 2/384 (0%)

Query: 9   RPLADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKW-SWLGLGGYPE 67
           RPL  T ++            DG+GL+  +KP+G+K W  RY +P+ K  + L  G YP 
Sbjct: 6   RPLTHTEVSKARTPDKELSLHDGDGLFLLIKPSGKKLWRFRYLRPETKKRTTLSFGSYPA 65

Query: 68  ISGSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESG 127
           +S + ARQ  A+     + G +P       +   Q+A  + F  + R WF  ++T+  + 
Sbjct: 66  LSLADARQLRAEHLALLAKGIDPQQKVAKEEEEAQIAVESIFINVARNWFTLKQTNVSAD 125

Query: 128 TSRRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLA 187
            ++ +  +LE  V P        EI     ++ L  ++ +G +E + R+     EI   A
Sbjct: 126 HAKDIWRSLEKDVLPAIENIPVQEIKARTLIQALEPIKARGALETVRRLVQRINEIMVYA 185

Query: 188 RVTGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLL 247
             TG    NP  G+    +    ++   +  EELP L+R I     +   R  L    L 
Sbjct: 186 VNTGLIDANPASGIGMAFERPKKQHMPTIRPEELPKLMRTIAMSNLSIPTRCLLEWQLLT 245

Query: 248 ASRPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLL 307
             RP+E     W+EID+ K+ W+IPAERMK +R+H+VPLS +++E L  +R ++G    +
Sbjct: 246 LIRPAEASATAWAEIDIEKRTWSIPAERMKAKRDHIVPLSNKALELLDIMRPISGNREHV 305

Query: 308 FPGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA- 366
           FP R D   P ++     AL+R+GY G+   HG R IAST +NE GF+ + IEA L+H  
Sbjct: 306 FPSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAALAHCD 365

Query: 367 KEGIAGVYNKAVYLPQRRVMMQWY 390
           K  +   YN++ YL QR+ +M W+
Sbjct: 366 KNEVRRAYNRSTYLEQRKELMDWW 389