Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 388 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

 Score =  236 bits (602), Expect = 9e-67
 Identities = 140/388 (36%), Positives = 208/388 (53%), Gaps = 4/388 (1%)

Query: 11  LADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPEISG 70
           L DT     + +   YR  D NGLY  VKPNG+K+W  R+K  +GK S   LG YP +  
Sbjct: 2   LTDTQCRTAKLKEKLYRLNDFNGLYLEVKPNGKKAWRYRFKL-NGKSSMFALGEYPTVKL 60

Query: 71  SLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGTSR 130
           + AR+K  Q R+  + G +P  ++Q  K+     A+NTFE + +EW + +   W   T  
Sbjct: 61  AEAREKCEQARKQVADGVSPTQARQLDKIRKVNDASNTFELIAKEWLQMK--DWADITKT 118

Query: 131 RVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARVT 190
           R L  LE  VFP  GK    EI P   ++ L+   ++G        R     +++LA  T
Sbjct: 119 RRLDMLERIVFPAIGKLPIREITPHHILKILQETAKRGAPTVAAEARRTISSVFELAVAT 178

Query: 191 GRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLASR 250
            RA  +P+  + K L +   ++   ++ +++  LL   ++   +  V   + L+    +R
Sbjct: 179 LRADSDPVWPVRKALPANKTQHKQALNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLAR 238

Query: 251 PSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLFPG 310
           P+E+ EA W+E DL   LWTIPA RMK RREHV+PL  Q++  L  L+ LTG    +FPG
Sbjct: 239 PAEVTEAEWAEFDLDNGLWTIPATRMKARREHVIPLPSQAVSMLRTLQGLTGHRQHIFPG 298

Query: 311 RKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA-KEG 369
           R +   P ++      L+ LG++G  + H  R   ST LNE G+  + IEAQL+HA    
Sbjct: 299 RDNPRGPMTSHSLRQLLKSLGWSGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTNN 358

Query: 370 IAGVYNKAVYLPQRRVMMQWYADHLDEL 397
           +   YN A YL +R+VMMQ +AD L+ L
Sbjct: 359 VRRTYNHATYLDERKVMMQEWADKLEML 386