Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 390 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

 Score =  312 bits (799), Expect = 1e-89
 Identities = 160/386 (41%), Positives = 227/386 (58%), Gaps = 2/386 (0%)

Query: 10  PLADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPEIS 69
           PL D  +   +PE   Y   DG GL   ++P G KSW  RY+   GK   +  G YP +S
Sbjct: 2   PLNDMQVRSAKPEEKPYTLGDGLGLSLLIEPTGSKSWRFRYRF-GGKPKMISFGAYPLVS 60

Query: 70  GSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGTS 129
            + AR+K  + R+    G NP   ++A+K+     + NTFE + REW   +   W +G +
Sbjct: 61  LAEARKKRDEARKQVLDGINPSEHRKAQKLNLMSESENTFEIIAREWHSMKSARWSTGYA 120

Query: 130 RRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARV 189
             ++ A    +FP  GKR   EI PLE +  LR ME++G +E+M +VR  C E++  A  
Sbjct: 121 SDIMEAFRNDIFPYVGKRAIAEIKPLELLNVLRKMEKRGALEKMKKVRQRCSEVFRYAIA 180

Query: 190 TGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLAS 249
           TGRA  NP   L+  L +  A++Y  +  +E+PA ++A+ SY  +  V+I  +LL L   
Sbjct: 181 TGRAEINPAADLTSVLTTHKAQHYPFLKADEIPAFIQAVESYTGSVLVQIAAKLLMLTGV 240

Query: 250 RPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLFP 309
           R  E+R A WSE DL   +W +PAERMK+RR H+VPLS Q++  L++L+T++G Y  +FP
Sbjct: 241 RTIELRSAEWSEFDLEHAIWEVPAERMKKRRSHLVPLSTQALSLLSQLQTISGNYKYVFP 300

Query: 310 GRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA-KE 368
           GR D   P S       ++ +GY GR TGHGFRH  STIL+EQG+D   IE QL+H  K 
Sbjct: 301 GRNDPNKPMSEGSINRMIKHIGYEGRLTGHGFRHTMSTILHEQGYDSAWIEMQLAHVDKN 360

Query: 369 GIAGVYNKAVYLPQRRVMMQWYADHL 394
            I G YN A+YL  R  M+QWY+D+L
Sbjct: 361 SIRGTYNHALYLDGRAKMLQWYSDYL 386