Pairwise Alignments

Query, 283 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

 Score =  107 bits (267), Expect = 3e-28
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 18/292 (6%)

Query: 4   RRLLGAAATLVVAMSSTLAS-ADSKTLSIGYVDGWSDSVATTHVAAEVIKSKLGYDVKLQ 62
           R LL  A + +VA     A  A  K + +G V+ W+D +AT+ +A +V+   LGY  K  
Sbjct: 7   RSLLPLALSSIVATPLFAAEPAACKNVRLGVVN-WTDVIATSAMA-QVLLDGLGYQTKQT 64

Query: 63  AVATGIMWQGVATGKLDAMLSAWLPV---THGEYWAKNKDKVVDYGPNFKDAKIGLIVPE 119
           + +  I++ G+   +LD  L  W P+   T   +   N+ KV+D  P+ +DA+  L VP+
Sbjct: 65  SASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQFKVLDK-PSLEDARATLAVPK 123

Query: 120 YVKAKSIEDL----KTDTTFKNKIVGIDAGSGVMLKTDEAIKQYGLD---YKLQASSGAA 172
           Y+  K ++      K +     KI GI+ GSG   +    I +   D   ++L  SS A 
Sbjct: 124 YLYDKGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVESSEAG 183

Query: 173 MIAELTRAEDKQESIAVTGWVPHWMFAKWKLRFLDDPKGIYGAAE---TVNSIGSKGLEK 229
           M+A + RA  ++E++   GW PH M     + +L D +   G  E   TV ++ +    +
Sbjct: 184 MLAAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAE 243

Query: 230 KAPEVAAFLKKFQWASKDEIGEVMLAIQEGAKPDAAAKDWVAKHPERVAEWV 281
           + P     L   +++++DE   +M  + +      +A+ W+  HPE  A W+
Sbjct: 244 RCPNALRLLANLKFSAEDE-SRMMQPLLDHKDALESARQWLKDHPEDKARWL 294