Pairwise Alignments

Query, 436 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

Subject, 433 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) from Variovorax sp. SCN45

 Score =  265 bits (677), Expect = 2e-75
 Identities = 184/450 (40%), Positives = 237/450 (52%), Gaps = 49/450 (10%)

Query: 8   AKALAAVLSGKASLNSSLPTQLDKVEDRDRGFTQDLAFGTARWQPRLSALAATLLQK-PF 66
           A ALA++ +G     +S     + VE   R   Q L F   RW  R  AL   L ++ P 
Sbjct: 3   AVALASIRAG-----TSGSVAFEAVEPALRPGVQALGFQVLRWLGRAEALRRHLAKRTPP 57

Query: 67  KAADADVEALLLVGLYQLLY--TRVPAH--AAIGETVGCADKLKKPWAKA-LLNAVLRRA 121
              DA     LL     L +  TR P      + + V  A +     A+A  +NA LRR 
Sbjct: 58  PLPDA-----LLCTALALAWDGTRAPYEPFTLVDQAVEAAKRNPATRAQASFINACLRRF 112

Query: 122 QRESEALLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHS 181
            RE + L+A  + +PV +  HPRW  + LK   P  W+ + AA+NA  PM LRVN R  +
Sbjct: 113 LRERDELVAVTDSEPVAQWNHPRWWIERLKRDHPRDWQRVLAADNAQAPMTLRVNARKST 172

Query: 182 RDAYLQLLTDAGIGATPCVYSVDGIVLEAATDVRSLPGFAEGWISVQDEAAQLAADLL-- 239
             +YL  L  AG+ AT    S  G+ L  A  V+ LPGFAEG  SVQD AAQ+AA LL  
Sbjct: 173 AASYLVELEAAGLSATRVGPS--GLQLARARPVQQLPGFAEGASSVQDAAAQMAAPLLLE 230

Query: 240 ---DLAPGQ---RVLDACCAPGGKTCHILEVE-KDLVGVVAVDLEAKRLVRVRENLARLG 292
                APG    RVLDAC APGGKT H+LE+   D + V A++++A R  R+ E LAR+G
Sbjct: 231 GLLPAAPGGVPLRVLDACAAPGGKTAHLLELAGPDAIDVTALEVDAVRSRRIDETLARIG 290

Query: 293 LSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQG 352
           L A ++ AD    A WWD  PF  ILLDAPC+A+G++RRHPD++  R+  D A L+  Q 
Sbjct: 291 LKARVLVADAARPADWWDRTPFDAILLDAPCTASGIVRRHPDVRWLRRESDTAQLSAQQA 350

Query: 353 ELLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSGARELDLATTAGIRQPHGRQ 412
            LL ALWP +  GG LLY TCS    E ++ I+AFL   + AR L          P    
Sbjct: 351 ALLAALWPLVRTGGRLLYCTCSVFREEGSQQIDAFLVHNTDARLL----------PSPGH 400

Query: 413 LLAQEGG------------HDGFYYAKLIK 430
           LL Q G             HDGF+YA L K
Sbjct: 401 LLPQSGSNARGVPDNPSGDHDGFFYALLEK 430