Pairwise Alignments

Query, 1215 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  224 bits (572), Expect = 3e-62
 Identities = 162/519 (31%), Positives = 260/519 (50%), Gaps = 17/519 (3%)

Query: 566  MRRQIQHRRMAERALNDQFEFMRALVNETPHPIYVRDRNGLLQTCNDSYLQVFDVKREDV 625
            M   I  R+ AE+AL  +   + A V   P  + + D+       ++ +L+ + ++ +D+
Sbjct: 538  MATDITKRKKAEKALTIEKARLNAFVTHAPAAVAMFDKEIRYIAYSNRWLEEYQLEGKDL 597

Query: 626  IGKSALQISTALETEASQYHADYQRVVAQGNPLIVDRPLHIRGKKLTIYHWILPYRDSTG 685
             GKS  ++   +  E    HA   +     N     RP      +   +  + P+    G
Sbjct: 598  YGKSHYEVFGTISEEWKAIHARCLKGEVISNEEDRWRPDGWDHDQFLRWE-VRPWHHYDG 656

Query: 686  EVQGIIGGWIDISERRQLFDELRAAKERADEANRAKSTFLATMSHEIRTPMNAVIGMLEL 745
             + GI+    DI+E     +EL+ AK  A++A++AKS FLA MSHEIRTP+N VIG  +L
Sbjct: 657  SIGGIMMLTQDITESCLQREELKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTDL 716

Query: 746  TLKRADQGHLDRPAIEVAYHSAKDLLELIGDILDIARIESGRLSLSPERVNLKDVIESVV 805
             LK  D        + +   S   LL +I DILD ++IE+G+L L  +R +L ++ E   
Sbjct: 717  VLK-TDLSETQAQYLSIVNQSGNALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTS 775

Query: 806  RVFDGLARQKTLSLLLEFKPGLDDTDVLIDPLRFKQVLSNLVSNAIKFTERGEVKVKV-E 864
             +      +K L +LL   P +    + +D +R KQ++ NL+ NA KFTE GE+++++  
Sbjct: 776  DIITYEVHKKGLEMLLNIHPDI-PRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYP 834

Query: 865  VHATDLPQQVEMKLVVEDTGIGISREDQLRLFEPFSQADNSGHLARSGAGLGLVICRSLC 924
            +   +  +++ ++  V DTGIGI  E Q ++FE FSQ D S      G GLGL I   L 
Sbjct: 835  IDKDEASREMVIRFSVRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLL 894

Query: 925  AMMGGQLSLSSVPMVGTQVYVSLKM-HSLQPVHAVEEPKPATPTPAPVLNVLVVDDHPAN 983
             +M   L L S    G+  Y  L + +       +EE          V NVL+VDD+  N
Sbjct: 895  QLMHSGLQLHSTVGKGSTFYFDLNVKYEYGERITLEE-------DLSVENVLIVDDNDNN 947

Query: 984  RLLMCQQLGYLGHQFTAAQHGAAGFQAWRQ-EHFDLVIADCNMPIMNGYELSRSIREYEQ 1042
            R+++ + +   G   + A++G    Q + + E FD+V+ D +MP MNG E  R IRE   
Sbjct: 948  RMIIERMMALRGISTSQAKNGFEAIQKFVEGEKFDVVLMDYHMPYMNGIETIRKIREIVD 1007

Query: 1043 REQLPPCVILGFTANAQPEEKRRCAEAGMNDCLFKPISL 1081
            R+     +I   +++   +  + C E G+   L KPI L
Sbjct: 1008 RQP----IIFLHSSSDDDKILKACKELGVRKKLVKPIKL 1042



 Score = 63.5 bits (153), Expect = 1e-13
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 26/236 (11%)

Query: 958  VEEPKPATPTPAPVLNVLVVDDHPANRLLMCQQLGYLGHQ--FTAAQHGAAGFQAWRQEH 1015
            ++ PK   P       VL+V+D+  N LL    +  L        A +G    +  + E 
Sbjct: 1066 IDLPKNLFPNDG---KVLIVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDEL 1122

Query: 1016 FDLVIADCNMPIMNGYELSRSIREYEQREQLPPCVILGFTANAQPEEKRRCAEAGMNDCL 1075
              ++  D  MP MNGYE +++IR+   +  +   +I+  TA     E+ +C +AGMND +
Sbjct: 1123 PSVIFMDVQMPEMNGYEATQAIRKKYNKHNI---LIIALTAGNIKGEREKCMQAGMNDFI 1179

Query: 1076 FKPI----SLTILERQ-----------LAQIGPHPTSTLLDLSSLDALTGGDPQLSRRLL 1120
             KP      + ++E+             A     P+  L D+    A+  G P L   + 
Sbjct: 1180 AKPFVEEDVIKLMEKWHFNDLDSDLKIHAPSSESPSKRLFDIDKFQAVL-GFPDLESEMF 1238

Query: 1121 EELLSS--SAHDRQEIIALVARQAPLQDIIEQAHKIKGAARIVQASVLAAQCEALE 1174
            + +L S  S  ++ E   L   Q   + I + AHK+   A  +  S L+     +E
Sbjct: 1239 QIILKSGKSELEKSEATFLEILQNQDEGISQAAHKLYSTASAMYLSKLSTLATKME 1294



 Score = 27.3 bits (59), Expect = 0.009
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 602 DRNGLLQTCNDSYLQVFDVKREDVIGKSALQISTALETEASQYHAD---YQRVVAQ-GNP 657
           D  G     N +        + +++GKS   +         QYH     Y + + Q GN 
Sbjct: 181 DLEGNFLMANKASANSLGFHKGELVGKSLSDVIPL------QYHGSLKQYLKYIRQNGNS 234

Query: 658 LIVDRPLHIRGKKLTIYHWI---LPYRDSTGEVQGIIGGWIDISERRQLFDELRAAKERA 714
                 +H++ K  +I  W+   +   D  G    ++G  +DI+ER +L  E    KE  
Sbjct: 235 ---QGTMHVQHKDGSIRIWLYSNILLNDQAGTPY-VLGNALDITERHRLEREYNRLKEML 290

Query: 715 DEAN 718
           ++ N
Sbjct: 291 EQTN 294